Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto1g0076 TTGATCGGCAGCGGAAGTGAAGGAAACGGCGCCGTTCTGCGTATTGGCGACATTGAGGAAGCCCAATTGACCGGTGGCCTGGCCGGAGGCCTGGAACAGAGTGGTAAGGGTAGCGGATCCGTTGTTGAGATTCTGGAACTTGTTGACGTCGTAGTAATCGAGGATGACGTGGATGCTGAGGACCTTCTTGATAACGTCCATGGACTTGCCGGAGAGGGAGGAGATGCCGGCGTTGTCGACGGCGAGGACGGTGATGGTCTGGCGGTTATTGATGTCGGTGGAAAGTTGGGTCTGAGTAAGGGTTTCCTTCTGAAGCAGTGTATAGCTGCTGTTGCCGACGTCATTCTCATTTCTCGGCGACATGAAGCTCACCGTCAAGACTTTGAAAGGAAGCAATTTTCAAATTACGGCTCACCCTTCCGATACTCTGAAGTCACACTACCTTTTTCACCCCAGATTATGGCTGTTAAGAGGAACATTGAAGATGTACAAGGAAAAGATAATTATCCATGTGGACAGCAATTGCTGATCCACAGTGGCCAGGTGTTGAAAGATGAGACTACACTAGCAGAGAACAAGGTCACTGAAGATGGATTTCTTGTTGTCATGCTTAGCAAGAATAAAACCTTGAGTTCAGCTGGGACTTCATCTGCTCAGCCTGCTAGCAATCCAACTACAACTGTTTCAACTTCAAATTCCATTCCTGTGCCTGAACCACATGTACAACCTCAAGCTGCAAACAACATAACATCTGCCACAGATGACACAACAACAAATGTGCCTATGGATACTTATGATGATGATGCTGCTTCAAATTTAGTTGCTGGTACTAATCTTGAACAGACTATTCGACAAATTATGGACATGGGTAGTGGCAATTGGGACAGAGAGACAGTTATACGTGCTCTTCAGGCAGCTTTTAATAACCCAGAGCGTGCTATAGATTACTTGTACTCTGGAATTCCTGAAGCAGCAGAAGTTGCCGAACCAGTTGGCCATTTTCCAGCTAGTCAGACAACTGAAAGAAGTGGGGCCCCTGCTGGAGTTGCTCCTGGAGCACCTAACTCATCTCCCTTAAATATGTTTCCACAGGAGGCAATTTCTGGTGCTGGTGCCGGTGCTGGAGATGGTGCTGGAGTTGGATCTCTTGATTTCCTTAGAAACAATCCCCAGGTTGTTATGGTTGGAGGTGTTGAGGAATCAATACTGTTATCAGTTATACCAATATGCCTGAGTAGATTTCAAACATTGCGTACAGTGGTGCAAACCAATCCACAGATTCTACAGCCTGTGCTTCAGGAGCTTGGAAAGCAGAATCCCCAACTTTTTGATCTGATTCAAGATCACCATGCTGAGTTTTTCCAGTTAATTAATGAACCAGTTGACGGTTCTGAAGGAGATATATTTGATCAGCCTGAGCAAGACTTGTTTCAATCCAATGATTTGACGGCAGCTGATCAGGAAGCAATTGCAAGACTTGAGGCTCTGGGATTTGATAGAGCGTCAGttttagaggcatttttggcaTGTGACCGAGATGAGCAATTGGCAGCCAACTATTTATTGGAGAATGCTGGAGATTTTGAAGATTGA 1593 0.4545 LIGSGSEGNGAVLRIGDIEEAQLTGGLAGGLEQSGKGSGSVVEILELVDVVVIEDDVDAEDLLDNVHGLAGEGGDAGVVDGEDGDGLAVIDVGGKLGLSKGFLLKQCIAAVADVILISRRHEAHRQDFERKQFSNYGSPFRYSEVTLPFSPQIMAVKRNIEDVQGKDNYPCGQQLLIHSGQVLKDETTLAENKVTEDGFLVVMLSKNKTLSSAGTSSAQPASNPTTTVSTSNSIPVPEPHVQPQAANNITSATDDTTTNVPMDTYDDDAASNLVAGTNLEQTIRQIMDMGSGNWDRETVIRALQAAFNNPERAIDYLYSGIPEAAEVAEPVGHFPASQTTERSGAPAGVAPGAPNSSPLNMFPQEAISGAGAGAGDGAGVGSLDFLRNNPQVVMVGGVEESILLSVIPICLSRFQTLRTVVQTNPQILQPVLQELGKQNPQLFDLIQDHHAEFFQLINEPVDGSEGDIFDQPEQDLFQSNDLTAADQEAIARLEALGFDRASVLEAFLACDRDEQLAANYLLENAGDFED 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto1g0076 530 ProSiteProfiles Ubiquitin domain profile. 144 209 IPR000626 GO:0005515
Sto1g0076 530 MobiDBLite consensus disorder prediction 211 258 - -
Sto1g0076 530 Gene3D - 483 524 - -
Sto1g0076 530 SUPERFAMILY XPC-binding domain 413 468 IPR036353 GO:0003684|GO:0006289|GO:0043161
Sto1g0076 530 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 484 524 IPR015940 -
Sto1g0076 530 SUPERFAMILY UBA-like 476 527 IPR009060 GO:0005515
Sto1g0076 530 Pfam Ubiquitin family 145 206 IPR000626 GO:0005515
Sto1g0076 530 Gene3D - 272 322 - -
Sto1g0076 530 SMART uba_6 279 319 IPR015940 -
Sto1g0076 530 SMART uba_6 486 523 IPR015940 -
Sto1g0076 530 Gene3D - 372 461 IPR036353 GO:0003684|GO:0006289|GO:0043161
Sto1g0076 530 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 277 320 IPR015940 -
Sto1g0076 530 SUPERFAMILY Ubiquitin-like 145 216 IPR029071 -
Sto1g0076 530 SMART ubq_7 125 205 IPR000626 GO:0005515
Sto1g0076 530 PANTHER UBIQUITIN RECEPTOR RAD23A-RELATED 151 392 - -
Sto1g0076 530 PANTHER UBIQUITIN RECEPTOR RAD23A-RELATED 413 529 - -
Sto1g0076 530 PRINTS DNA repair protein Rad23 signature 512 527 IPR004806 GO:0006289
Sto1g0076 530 PRINTS DNA repair protein Rad23 signature 480 496 IPR004806 GO:0006289
Sto1g0076 530 PRINTS DNA repair protein Rad23 signature 497 511 IPR004806 GO:0006289
Sto1g0076 530 PRINTS DNA repair protein Rad23 signature 431 453 IPR004806 GO:0006289
Sto1g0076 530 SUPERFAMILY UBA-like 276 327 IPR009060 GO:0005515
Sto1g0076 530 Pfam UBA/TS-N domain 486 521 IPR015940 -
Sto1g0076 530 Pfam UBA/TS-N domain 279 317 IPR015940 -
Sto1g0076 530 CDD Ubl_Rad23 153 204 - -
Sto1g0076 530 Pfam XPC-binding domain 413 460 IPR015360 GO:0003684|GO:0006289|GO:0043161
Sto1g0076 530 Gene3D - 141 210 - -
Sto1g0076 530 MobiDBLite consensus disorder prediction 335 358 - -
Sto1g0076 530 PANTHER UV EXCISION REPAIR PROTEIN RAD23 151 392 - -
Sto1g0076 530 PANTHER UV EXCISION REPAIR PROTEIN RAD23 413 529 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto1g0076 Sto-Chr1 482324 491653 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto1g0076 K10839 - gmx:100804038 506.138
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto9g0642 9 6269478 6275933 Sto1g0076 1 482324 491653 CCT