Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto1g0072 ATGGCCATCCTCGCCAGTAAGGATTCAACTCACCCTCATCACCAACATAATAATgcctcatcatcttcttctttaacAGAACAAGTGGAATCTCCCCAAATCACATGTGAAATCTGCGCAGAAACCAAATGTAGTACCCAATTCTTCACAAACCATACATGTCACCATTCGTTCTGTACTGAATGTGTAACCAAACAAGTCGAAACAAAGATCCAACAGAGAATCTCAGTGGTTTCATGTCTTGCTTTGGATTGCAAGGCCTTCCTTCAGCTTGAAGATTGTAGGCCGATACTTCCAAAACACTTGCTTGAGAGCTGGCAAGATGTCTTGTGTGAATCTCTGTTTCTCCAAGTTCCTAAATCTTACTGCCCCTTCAAGGATTGTTGTGCAATTTTGCTACGtgaggaaaaagaagaagaaagcttAAGGGAATGTGAGTGTCCTCTTTGCCATAGATTGTTCTGTGCAAGGTGTTATGTGCCATGGCATTCTGGGGTTGAATGTGAGGAGTTTGAGAGAGTGAATGGGATTGTAGGTGAGAGGGAAGATAGGCTTATGAGAGAGCTTGCTGATGAAAAGAACTGGAGAAAGTGTCCCAACTGTAACTTCTTTGTGGAGAAGAAAAGTGGGTGCCAACATATCATTTGCAGGTGCAAGTTTGAATTTTGCTACAAGTGTGGACAACCAGAGAGAACTCATGGAATTGAAGCCTGCTCTGCCTCTAAAACAGAGAAACTGAAGTCCCCAATTGAAACAGAGGAATCCTCCTCACAATCTCAAGTTATCTGTGAAATCTGTGCAGAAACCAAAGGGTGTACCCAGATGATCACAAATCAGAGATGTGACCATTCTTTCTGCTCTGATTGTGTGACCAAACAAATCGCCACGAAGATCCAAGACAGCATATCAGTGGTTTCATGTCCTGGTTTGGATTGCAAGGGTGTTCTTGAGCTTGATGCTTGTCGGCCATGGCTTCCCAAAGACTTGCTTGATAGGTGGGATCAAGCTCTGTGTGAAAGTCTTTTTCTTTCAGCCCCTAAATTTTATTGCCCCTTCAAGGATTGTTCAGCTATGTTGGTGGTTGataatgaggaagaagaagctaTAAGCGAAACAGAGTGCCCTGTTTGCCATAGACTGTTCTGTGCAAGGTGTTATGTGTCTTGGCATTCTGGGGTTGAATGTGAGGAGTTTCAGAAATTGAAtgagaatgagagagagagggaagatCTGCTTGTGAGAGAGCTTGCTAGTGAAAAGAAATGGAGAAGGTGCCCTCAGTGTAAGATTTATGTGGAGAAGATAGATGGGTGTTTACATATCACTTGCAGGTGCCAATATGAGTTTTGCTATAAGTGTGGAGATGAGTGGACTTCTACTCATGCTAAGAAAAGGAAAGACATCATTATTAGCATGTTCAGTTTGTGGTTGATGTTTATAAGAAAAGTCTATTGGATAGtcctttga 1467 0.3974 MAILASKDSTHPHHQHNNASSSSSLTEQVESPQITCEICAETKCSTQFFTNHTCHHSFCTECVTKQVETKIQQRISVVSCLALDCKAFLQLEDCRPILPKHLLESWQDVLCESLFLQVPKSYCPFKDCCAILLREEKEEESLRECECPLCHRLFCARCYVPWHSGVECEEFERVNGIVGEREDRLMRELADEKNWRKCPNCNFFVEKKSGCQHIICRCKFEFCYKCGQPERTHGIEACSASKTEKLKSPIETEESSSQSQVICEICAETKGCTQMITNQRCDHSFCSDCVTKQIATKIQDSISVVSCPGLDCKGVLELDACRPWLPKDLLDRWDQALCESLFLSAPKFYCPFKDCSAMLVVDNEEEEAISETECPVCHRLFCARCYVSWHSGVECEEFQKLNENEREREDLLVRELASEKKWRRCPQCKIYVEKIDGCLHITCRCQYEFCYKCGDEWTSTHAKKRKDIIISMFSLWLMFIRKVYWIVL 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto1g0072 488 ProSiteProfiles Zinc finger RING-type profile. 263 308 IPR001841 -
Sto1g0072 488 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 30 114 IPR013083 -
Sto1g0072 488 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 5 228 - -
Sto1g0072 488 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 250 455 - -
Sto1g0072 488 ProSiteProfiles Zinc finger RING-type profile. 36 80 IPR001841 -
Sto1g0072 488 SUPERFAMILY RING/U-box 258 340 - -
Sto1g0072 488 SUPERFAMILY RING/U-box 108 172 - -
Sto1g0072 488 ProSiteProfiles TRIAD supradomain profile. 259 467 IPR044066 -
Sto1g0072 488 SMART ring_2 350 428 IPR001841 -
Sto1g0072 488 SMART ring_2 129 201 IPR001841 -
Sto1g0072 488 SMART ring_2 263 310 IPR001841 -
Sto1g0072 488 SMART ring_2 36 80 IPR001841 -
Sto1g0072 488 ProSitePatterns Zinc finger RING-type signature. 281 290 IPR017907 -
Sto1g0072 488 SUPERFAMILY RING/U-box 406 462 - -
Sto1g0072 488 SUPERFAMILY RING/U-box 338 400 - -
Sto1g0072 488 SUPERFAMILY RING/U-box 31 113 - -
Sto1g0072 488 SMART ibrneu5 405 463 IPR002867 -
Sto1g0072 488 SMART ibrneu5 104 168 IPR002867 -
Sto1g0072 488 SMART ibrneu5 180 238 IPR002867 -
Sto1g0072 488 SMART ibrneu5 331 395 IPR002867 -
Sto1g0072 488 MobiDBLite consensus disorder prediction 1 26 - -
Sto1g0072 488 Pfam IBR domain, a half RING-finger domain 414 461 IPR002867 -
Sto1g0072 488 Pfam IBR domain, a half RING-finger domain 120 168 IPR002867 -
Sto1g0072 488 Pfam IBR domain, a half RING-finger domain 333 395 IPR002867 -
Sto1g0072 488 Pfam IBR domain, a half RING-finger domain 186 230 IPR002867 -
Sto1g0072 488 ProSitePatterns Zinc finger RING-type signature. 54 63 IPR017907 -
Sto1g0072 488 Gene3D - 391 468 - -
Sto1g0072 488 Gene3D - 166 266 - -
Sto1g0072 488 ProSiteProfiles TRIAD supradomain profile. 32 242 IPR044066 -
Sto1g0072 488 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 250 455 IPR031127 GO:0004842|GO:0016567
Sto1g0072 488 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 5 228 IPR031127 GO:0004842|GO:0016567
Sto1g0072 488 SUPERFAMILY RING/U-box 183 240 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto1g0072 Sto-Chr1 452231 456013 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto1g0072 263 454 C3H Transcription Factor Family AT2G19610 28.358 3.84e-17 81.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto1g0072 K11975 - eus:EUTSA_v10021980mg 342.813