LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sto1g0052	atgaaattcctattcttcATCCTATGCTTCTCTACCCCTTTATGTGTTTCTTCTGCTTTGAGCTCCCATGGATTGACTCTATTATCACTCTTAAAGCACTGGACTTTTGTGCCTCCTTCCATCAATTCAAGCTGGAAGGCCTCTGATTCTTCCCCTTGCTCATGGGTAGGAATACAATGTGACCATCACAGTAATGTGGTCTCTCTTAATCTCACTGCTTCTGGGATTAATGGTACACTAGGAccagaaattggaaacttgaattactTGCATACCCTTGTGTTGTTGTCAAATGATTTCTCAGGAATAATACCTCTAGAGTTAGGTAATTGTAGTATGCTTGAGTATATTGATCTTTCGGATAACTATTTTAGTGGACAAATACCGTATACCTTGAAGAACTTACTGAGgcttaagcatatatatatgtttgacaaCAATTTATCTGGAGTAATACCTCAAAGCTTGGGGATTAATAGCAGTTTAGAGAGATTGGATTTGATGAATAATAAGTTCACTGGTAACATCCCACCTAATCTGTGTTTTGGAAAGCAATTACGTGTACTGAATTTAGGTGAGATTCCTTTAGAAATTGGGAAGATGAAAAAGCTGCTAAGTTTGGATGTGTCTCTGAACAATCTGACAGGAAGTGTGTATGTTCTTAATGAACTTTCTTCTTTGATTGAAGTCAATATTTCGTACAACTCATTCGCTGGTCCCGTACCAGCAAGGCTAATGCAATATCTCAATTCTTCTATGTCATCATTTTTGGGAAATCCTGGCCTTTGTATTGATTGTTCACTGTCAAAAGGTCTGAGTTGTGCTGAAATTGAAACTTTGAAGCTATGTGGTCACCACAAATCAACCAATAAGAATGGCTTAAGCATAGTTAAAATTGTGATGATTGAACTTGGATGCTCAATCTTCCTGTATTTCATACTACCAGGACTAGTTTACAAGTACGTGAAATACAGATCAAAGCAGAGagaaatggaagaagaagccGAATTGTCTACAGCTATTGACAGAATGGTCCATGGAATAGTTGGAGATGAGCCATCATCTTCCCTAGTCAAGGAAGTGATGAAGGCTACAGGGAACCTAAATGACAAGCATATCATTGGAAGAGGAGCCCATGGAGTTGTTTATAAAGCCTCAATCGATCCGCGATCGGGTCACGTTGTTGCTGTGAAGAAGGTTGTTTTTAGAAGGAACAAGAAGAGGAGTTTAAGCATGCTGAGAGAAATTGAAACGGTCAGGAAGATCAAGCATCGAAATCTGGTCAGGTTTGAAGGCTTCTGGATGGGGAAAGACTATGGTCTAATCTTCTATCCTTACATGGTAAATGGAAGCCTTCATGATGTTCTTCATGAAAGGAATCAACTACCAACCTTGGGGTGGAATATCCGGTATAAGATAGCCGTTGGAATTGCGAATGGACTTGCATATCTCCATCATGATTGTGATCCTCCCATTGTTCATCAAGATATCAAACCCAAAAACATCCTTCTTGATTCTGAAATGGAAGCTCACATATCtgattttggtgtagccatgctTTTGAATCCGTCCTCGTCTTCTCCAACACAAAAGAGATCTACATATATTGCATTAGGTACAGTTGGGTATATTGCACCAGTTCAGAGTGGTGTTTCTGATGTGTATAGTTATGGGGTAGTTTTGCTTGAGCTGATAACTGGGAAAAAAGTATTAGATCCATCATTTATGGAGAAAATGACTTTAGTAGGATGGGTTAGATCCATGTGGATGCATACAAGAAGTATTGAAAACATTGTTGATTCAAGACTTGCAAGAGAGTTATCAGATGGTAATGTAGTGGAACAAGTTACTAGAGTTCTTCGTATAGCACTTCAATGTTCTGAGAAGGATCCACGCAAGAGACCCACAATGAGAAGAGTTATTAAGCTTCTTTGA	1935	0.3695	MKFLFFILCFSTPLCVSSALSSHGLTLLSLLKHWTFVPPSINSSWKASDSSPCSWVGIQCDHHSNVVSLNLTASGINGTLGPEIGNLNYLHTLVLLSNDFSGIIPLELGNCSMLEYIDLSDNYFSGQIPYTLKNLLRLKHIYMFDNNLSGVIPQSLGINSSLERLDLMNNKFTGNIPPNLCFGKQLRVLNLGEIPLEIGKMKKLLSLDVSLNNLTGSVYVLNELSSLIEVNISYNSFAGPVPARLMQYLNSSMSSFLGNPGLCIDCSLSKGLSCAEIETLKLCGHHKSTNKNGLSIVKIVMIELGCSIFLYFILPGLVYKYVKYRSKQREMEEEAELSTAIDRMVHGIVGDEPSSSLVKEVMKATGNLNDKHIIGRGAHGVVYKASIDPRSGHVVAVKKVVFRRNKKRSLSMLREIETVRKIKHRNLVRFEGFWMGKDYGLIFYPYMVNGSLHDVLHERNQLPTLGWNIRYKIAVGIANGLAYLHHDCDPPIVHQDIKPKNILLDSEMEAHISDFGVAMLLNPSSSSPTQKRSTYIALGTVGYIAPVQSGVSDVYSYGVVLLELITGKKVLDPSFMEKMTLVGWVRSMWMHTRSIENIVDSRLARELSDGNVVEQVTRVLRIALQCSEKDPRKRPTMRRVIKLL	644

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Sto1g0052	644	Pfam	Protein kinase domain	370	641	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Sto1g0052	644	PANTHER	RECEPTOR KINASE-LIKE PROTEIN XA21	134	218	-	-
	Sto1g0052	644	PANTHER	RECEPTOR KINASE-LIKE PROTEIN XA21	4	139	-	-
	Sto1g0052	644	PANTHER	RECEPTOR KINASE-LIKE PROTEIN XA21	221	644	-	-
	Sto1g0052	644	ProSitePatterns	Protein kinases ATP-binding region signature.	374	399	IPR017441	GO:0005524
	Sto1g0052	644	SMART	serkin_6	368	644	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Sto1g0052	644	Gene3D	Ribonuclease Inhibitor	25	183	IPR032675	-
	Sto1g0052	644	Pfam	Leucine rich repeat N-terminal domain	24	61	IPR013210	-
	Sto1g0052	644	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	492	504	IPR008271	GO:0004672\|GO:0006468
	Sto1g0052	644	PANTHER	OS08G0446200 PROTEIN	221	644	-	-
	Sto1g0052	644	PANTHER	OS08G0446200 PROTEIN	134	218	-	-
	Sto1g0052	644	PANTHER	OS08G0446200 PROTEIN	4	139	-	-
	Sto1g0052	644	ProSiteProfiles	Protein kinase domain profile.	368	644	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Sto1g0052	644	Gene3D	Phosphorylase Kinase; domain 1	347	446	-	-
	Sto1g0052	644	SUPERFAMILY	Protein kinase-like (PK-like)	352	644	IPR011009	-
	Sto1g0052	644	SUPERFAMILY	L domain-like	23	263	-	-
	Sto1g0052	644	Gene3D	Ribonuclease Inhibitor	184	270	IPR032675	-
	Sto1g0052	644	Gene3D	Transferase(Phosphotransferase) domain 1	447	644	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Sto1g0052	Sto-Chr1	345487	348140	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Sto1g0052	65	642	Receptor kinase-like Gene Family	AT1G17750	43.384	4.87e-136	423

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-XI-1	Sto1g0052		Pkinase	2.1e-41	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sto1g0052	-		-	qsu:112010432	532.332