Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto1g0051 ATGGGTGAGGTCAAGGCAATTGTTCCTGAGTCTGTGTTGAAGAAGCAGAAGAGGGAAGAGGAATGGGCATTGGCCAAAGCACAGGAACTTGAAGCTGCAAAGAAGAAGAGAGCTGAGAGCCGTAAGCTGATCTACAACAGAGCTAAGCAGTATGCCAAGGAGTACGAGGAACATGATAAGGAGTTGATCAGGTTGAAACGTGAGGCCAAGCTGAAAGGTGGATTTTATGTTGATCCAGAGGCCAAACTCTTGTTCATTATTCGAATTCGCGGTATTAATGCCATGCACCCAAAGACAAGAAAGATCTTGCAGCTCCTGCGACTGAGACAGATATTCAATGGTGTATTTCTTAAAGTTAACAAAGCAACAATGAACATGCTGCACAGAGTTGAACCTTATGTGACTTATGGTTACCCCAATCTGAAGAGTGTCAGAGAACTTGTTTACAAGAGGGGCTATGGTAAGCTCAACCATCAGAGAATTGCTTTAACTGACAACTCCATCGTTGAGCAGGCACTGGGCAAGTATGGAATCATATGCACTGAAGATCTTATCCATGAGATCATAACGGTTGGACCCCATTTTAAGGAGGCAAACAACTTCCTTTGGCCGTTTCAGCTCAAGGCGCCTTTGGGTGGTctaaagaagaagaggaaccaTTATGTTGAAGGAGGAGATGCTGGAAACCGGGAGAATTACATCAACGAGCTCATAAGGAGAATGAACTAG 729 0.4335 MGEVKAIVPESVLKKQKREEEWALAKAQELEAAKKKRAESRKLIYNRAKQYAKEYEEHDKELIRLKREAKLKGGFYVDPEAKLLFIIRIRGINAMHPKTRKILQLLRLRQIFNGVFLKVNKATMNMLHRVEPYVTYGYPNLKSVRELVYKRGYGKLNHQRIALTDNSIVEQALGKYGIICTEDLIHEIITVGPHFKEANNFLWPFQLKAPLGGLKKKRNHYVEGGDAGNRENYINELIRRMN 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto1g0051 242 Pfam Ribosomal protein L30p/L7e 84 134 IPR016082 -
Sto1g0051 242 Coils Coil 13 33 - -
Sto1g0051 242 TIGRFAM uL30_euk: 60S ribosomal protein uL30 9 242 IPR005998 GO:0000463|GO:0003735|GO:0022625
Sto1g0051 242 Pfam Ribosomal L30 N-terminal domain 8 79 IPR012988 -
Sto1g0051 242 CDD Ribosomal_L7_archeal_euk 83 242 IPR035808 -
Sto1g0051 242 PANTHER 60S RIBOSOMAL PROTEIN L7 6 242 - -
Sto1g0051 242 SUPERFAMILY Ribosomal protein L30p/L7e 83 242 IPR036919 -
Sto1g0051 242 ProSitePatterns Ribosomal protein L30 signature. 102 134 IPR018038 -
Sto1g0051 242 Coils Coil 48 68 - -
Sto1g0051 242 Gene3D - 83 242 IPR036919 -
Sto1g0051 242 PANTHER 60S RIBOSOMAL PROTEIN L7 6 242 IPR039699 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto1g0051 Sto-Chr1 342644 343936 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto1g0051 2 242 Cytoplasmic Ribosomal Protein Gene Family AT3G13580 86.307 2.74e-158 437
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto1g0051 K02937 - gmx:100813342 416.772