Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto1g0041 ATGGGACTGGATTTGAGGCAAGTGGTGGCTGCTATACTCACTCTTGCAATGTTCGTCATGCTTGGGAATATGATCAAAAGGGACCATTTTGATCCGCTTCAAGAGGTACTTCCTGGAGGAACAATGGATTTGGAGAATGGAAAGTTTGGTGTTTCTCATGTAAGAAAAAATGTAGCACCTTGGAAGGGAGTTGCCGACAAGCTCAAACCATGCTGGCTTAAGCCATATGATGATGATGTGGAACAGACTAAGGGATTTGTTACCGTTTCGTTGACCAATGGTCCCGAGTACCATATTTCTCAGATTGCAGATGCAGTGGTTGTTGCGAGACAGCTTGGGGCAAAACTTGTGCTTCCTGAAATTAGAGGAAGTCAACCTGGCGACAAGAGGAACTTTGAGGAAATTTATGATGTGGATGCATTCATGAAAAGCATGGAAGGATTGGTCAGAGTGGTGAAGGATCTTCCTGATCATATCTCAGGCCAGAATATTGCTGTTGTGAAGGTCCCCAATCGGGTCACAGAAGATTACATAGCCGCTCGTATTGAGCCAATATATAGATCGAAGGGAAATATAAGGCTTGCAACTTACTTCCCTTCAATAAACATGAGAAAGGGAGGCAAAAAAAGTGATACCGATTCCGTTGCATGCTTAGCAATGTTTGGAAGTTTAGAGCTGCAACCAGAATTGCATGAATTGATCGAATCAATGGTCGAGAGACTAAGAACTTTGAGCCACGAGTCAAATGGCCAGTTTATTGCTGTGGACTTGAGGGTTGATTTGTTGGATGGGAGAGGTTGCCAAGGAGGCAATGATGAACAAGACAAAAGCTGCTTCAATGCACACGAAATTGCAGTATTTTTAAGGAAGATCGGTTTTGACAAGGATACCTCAATTTATGTAACCGAATCAAAGGAGGATAGCAGCCTAGATTCTTTCAAAGATTTGTTTCCTAAAACTTACACAAAGGATGCCATCATGCCTGCAGATAAGAAGACAAAGTTCCTAGATTCTGAAGGTTCTGGATTTGAGAAAGTGATTGACTTTTACATAAGTACACAGAGTGATGTTTTTGTGCCAGCAAGTCCTGGTTTGTTCTATGCCAATGTAGCTGGTAAGAGAATTGGTTCTGCTAAAACCCAGATATTTGTTCCTGCCGACATTTCCGATCAGTATGCGTCAGCCTCCGACTTCCTCTCTCCATGCGCTGCTTGCAAATCTTTGAGGAGAAAATGCCCACAAGATTGTGTGCTAGCACCCTACTTTCCCTCATCCAATCCACAAAGATTTGCTAGTGTTCATAAAGTCTTTGGTGCTGGCAATATCACTAAGATGCTTCAGCAACTTCCTGAGCATTTACGAGGGGAGGCGGCGGAATGCATGTGTATCGAAGCGAGTTTACGAGTTGAAGATCCGGTCTATGGCTGCGTTCGAATAGTTTCTCAACTGCAACAACAGATCATCCAGACACAACATGACATAATGAAGTGTATAGTTTTGTGGGCGCTCAACAAGTTTGAGATCACCCATGGTTGCCAACTCCAAACACAAATTCTGAAGGGTCTCCTTGGTTCGATTGATGACAGTAACATCAAGGACAATGTCATAGTGGTGCACTGTTACATATGCTTCAGCATAAACAGGATCACTAAATCCAGTAAGCTGAAGAATGCGATTGAGCTTATTTGCATCATCCCCATCCTTGGTGAACTCTCCAGTAGCACCCTTAAGATAAGTTTTGTCAGTGTACATGCGACAACTGCCCCAAGAAAGAAATCACCTGAAAGAATCAGTGATCTCAAGTTCCCAGTAGAAGTCAGCGATCCTTGCACAAGGGTAGGTGGTGACATGGCAGTTTCCAGTGCAGCACTTTGGGTGGCATAA 1884 0.4347 MGLDLRQVVAAILTLAMFVMLGNMIKRDHFDPLQEVLPGGTMDLENGKFGVSHVRKNVAPWKGVADKLKPCWLKPYDDDVEQTKGFVTVSLTNGPEYHISQIADAVVVARQLGAKLVLPEIRGSQPGDKRNFEEIYDVDAFMKSMEGLVRVVKDLPDHISGQNIAVVKVPNRVTEDYIAARIEPIYRSKGNIRLATYFPSINMRKGGKKSDTDSVACLAMFGSLELQPELHELIESMVERLRTLSHESNGQFIAVDLRVDLLDGRGCQGGNDEQDKSCFNAHEIAVFLRKIGFDKDTSIYVTESKEDSSLDSFKDLFPKTYTKDAIMPADKKTKFLDSEGSGFEKVIDFYISTQSDVFVPASPGLFYANVAGKRIGSAKTQIFVPADISDQYASASDFLSPCAACKSLRRKCPQDCVLAPYFPSSNPQRFASVHKVFGAGNITKMLQQLPEHLRGEAAECMCIEASLRVEDPVYGCVRIVSQLQQQIIQTQHDIMKCIVLWALNKFEITHGCQLQTQILKGLLGSIDDSNIKDNVIVVHCYICFSINRITKSSKLKNAIELICIIPILGELSSSTLKISFVSVHATTAPRKKSPERISDLKFPVEVSDPCTRVGGDMAVSSAALWVA 627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto1g0041 627 ProSiteProfiles LOB domain profile. 400 501 IPR004883 -
Sto1g0041 627 PANTHER - 1 404 IPR024709 -
Sto1g0041 627 PANTHER PROTEIN MANNAN SYNTHESIS-RELATED 1 1 404 - -
Sto1g0041 627 Pfam GDP-fucose protein O-fucosyltransferase 101 374 IPR019378 -
Sto1g0041 627 Pfam Lateral organ boundaries (LOB) domain 401 494 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto1g0041 Sto-Chr1 271044 281124 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto1g0041 402 496 AS2 family AT3G26660 60.000 1.63e-38 136
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Sto1g0041 O-FucT 7.8e-24 CL0113
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto1g0041 - - gmx:100807062 604.749
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto1g0041 1 271044 281124 Sto1g0041 1 271044 281124 ECH