Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto1g0039 ATGACCTCCACATCTCGCGGTTCCACCAATGGCCATCTCTCCGCCACCAACGCCGACGACCCTCCCCGTCGCTCTGCCTCCCACTCCCCCGCCAGCGTCCACCACATTGACGTCAACATCGACGAAGACTTCACGGTAGATCCTGACGATCCTTTCGATATCACTCAAACCAAGAATGCAGCTCCGGAGACCCTCCAGCGATGGAGACAAGCAGCGCTAGTGCTCAATGCTTCCCGACGTTTTCGTTATACTCTGGACttgaaaaaggaagaagaaaaccaaaagaagaaaaacttgATTAGAGCCCATGCACAAGTCATAAGAgCAGCATTGCTTTTCAAATTGGCGGGTGAACGTGAACTAGAGACAAATACAACAGTGGCATCCCCAGTTCGATTTAGTGTCGGTGATTTTTCAGTTGGACTTGAAGAACTTGTCTCAATGTCTAAGGATCATAACGTTAAAGGCTTATCAAATTTACTAAAATCAAATCCTGAGAGAGGAATTAATGGGCATGATGCTGATCTATTAAGCAGGAAAACTGCATTTGGAACTAATACATATCCTCGGAAAAAAGGGAGAAGTTTATTGAGATTTCTATGGGAAGCTTGGCAAGATCTGACCctaatcatattaattatagCAGCTGCAGTGTCATTGGCGCTTGGAATAAAAACAGAGGGTCCGGAAGAAGGGTGGTATGATGGGGGAAGCATTGCTTTTGCAGTTTTTCTTGTCATTGTAGTTACAGCTTTCAGTGATTATCGGCAATCTCTGCAGTTTCAGAATTTAAATgcagaaaaacaaaatatacaATTGGAGGTCATTAGAGGTGGTAGAACAGTAAAGATATCGATATTTGAAATTGTTGTCGGTGATGTTGTGCCTCTTAAAATAGGAGATCAGGTTCCTGCTGACGGAGTTGTAATCACTGGCCACTCACTTGCCATCGATGAATCCAGTATGACTGGTGAAAGCAAGATTGTTCACAAAGATCACAAAGCACCCTTTTTGATGTCTGGCTGCAAAGTAGCAGACGGAGTTGGTTCTATGCTGGTAACTGGTGTTGGTATCAATACCGAGTGGGGATTGTTGATGGCAAGTATCTCAGAGGATACTGGCGAAGAGACTCCGTTACAGGTACGGTTGAATGGAGTAGCGACTTTTATTGGCATAGTTGGGCTTTCAGTAGCTCTTTCTGTGCTGGCAATCCTCTTGGGGAGATACTTTTCTGGCAATACAAGGGATGTAAATGGAAATGTCCAATTTGTTGGTGGAAAGACTAGTGTTAGTAATGCGGTAGACGGGGTCATCAAAATTTTTACTATTGCAGTCACAATTGTGGTTGTTGCAGTACCTGAAGGTCTTCCCTTGGCTGTTACCTTAACCCTCGCTTACTCGATGCGAAAAATGATGGCAGACAAAGCCTTGGTGCGAAGGCTGTCGGCCTGCGAAACTATGGGCTCTGCAACAACAATTTGCAGTGATAAGACAGGAACATTGACATTGAATCAGATGACTGTGGTGGAAGCGTATGTTGGgaggaagaaaataataaatctaCCAGATGACTCATCAAATTTGCACCCAGATGTTTTATCTCTGATAAATGAGGGCATTGCACAGAATACCAGTGGAAACGTTTTTGAGCCCAAGGGTGATGGAGAAGCAGAGGTTTCGGGCTCTCCTACAGAAAAGGCAATCCTTTCTTGGGCACTTAAGTTGGGAATGAAATTTGGTCTAATCAGATCAAGTTCAAAAATTCTACATGTCTTCCCCTTCAATTCGGAGAAAAAGCGAGGTGGTGTTGCGGTGAAGCTGGGGGACTCTGGTGTACATATACATTGGAAAGGAGCTGCGGAGATTGTTCTAGCCTCATGTACTCAATATCTTGATTCAAATGGTCTCTTGCAATCTATTGATGAAGAGAAGGACTTTTTCAAGGAGGCTATTGATGATATGGCTGCTCGCAGCTTGCGGTGTGTTGCCATTGCATACAGATCGTATGAAATGGACAAAGTTCCCTCCTATGAGGACGATTTGGCCCAGTGGTCCTTACCTGAGCATGAGCTTGTTTTGCTTGCAATTGTTGGTATAAAGGATCCCTGTCGCCCTGGAGTCAAAGATGCAGTTAAAGTATGCACTGACGCTGGTGTTAAGGTACGCATGGTTACCGGAGACAATATTCAGACGGCAAGGGCAATAGCTTTCGAGTGTGGAATACTATCTTCAAATGAAGATGTTGTTGAGCCAAATGTAATAGAAGGAAAGAAATTCCGCGCATTAACTGAGAAAGAAAGGGAACAAGTTGCTAAACAAATAACAGTAATGGGGAGGTCTTCTCCTAATGACAAGCTTTTGCTTGTGCAAGCACTGCGTAAGGGAGGTGAAGTTGTGGCTGTCACAGGAGATGGCACCAATGATGCTCCTGCGCTTCATGAGGCAGATATTGGTCTTTCAATGGGCATTCAAGGAACTGAAGTTGCAAAAGAAAGCTCAGATATTATAATTCTGGATGATAACTTTGCATCAGTAGTGAAGGTTGTCCGATGGGGCCGTTCTGTATATGCAAATATTCAGAAATTTATCCAGTTCCAGCTCACAGTTAATGTTGCAGCTCTTGTAATAAATGTTGTGGCAGCAATATCTTCCGGTGATGTTCCTCTGAATGCAGTACAGCTCTTGTGGGTGAATCTTATCATGGACACACTCGGGGCCCTTGCATTAGCCACTGAGCCACCAACGGACCATCTTATGCACAGATCACCAGTTGGCCGAAGGGAACCTCTTATAACCAATGTCATGTGGAGGAACTTGCTCGTACAGGCTCTATATCAAGTTATTGTTCTCCTTGTTCTTAACTTCCACGGCGATAAAATTCTACAGATTCATGACTCTAGAGCCCATAGATTTCAAGTGAAGAATACTTTAATATTCAACGCATTCGTCCTCTGCCAAATATTCAACGAATTCAATGCTCGGAAACCAGATGAAATGAATGTCTTCCGAGGAGTGACTAAGAACCGCCTCTTCATTGGAATTGTTGGAATCACCTTTGTACTTCAGATACTCATCATTGAGTTCCTTGGGAAGTTTACAAAAACAGTGAGGCTTAATTGGACGCTGTGGCTTGTTTCTATCTGCATAGGGTTTGTCAGCTGGCCTCTTGCTTTAGTTGGAAAACTCATTCCAGTTTCAAAAACTCCATGGTCCCGGTACATGATGAAGCCGTGGAGGCGATTCAGAAAGCCTCGTGCTATGCAATAA 3267 0.4304 MTSTSRGSTNGHLSATNADDPPRRSASHSPASVHHIDVNIDEDFTVDPDDPFDITQTKNAAPETLQRWRQAALVLNASRRFRYTLDLKKEEENQKKKNLIRAHAQVIRAALLFKLAGERELETNTTVASPVRFSVGDFSVGLEELVSMSKDHNVKGLSNLLKSNPERGINGHDADLLSRKTAFGTNTYPRKKGRSLLRFLWEAWQDLTLIILIIAAAVSLALGIKTEGPEEGWYDGGSIAFAVFLVIVVTAFSDYRQSLQFQNLNAEKQNIQLEVIRGGRTVKISIFEIVVGDVVPLKIGDQVPADGVVITGHSLAIDESSMTGESKIVHKDHKAPFLMSGCKVADGVGSMLVTGVGINTEWGLLMASISEDTGEETPLQVRLNGVATFIGIVGLSVALSVLAILLGRYFSGNTRDVNGNVQFVGGKTSVSNAVDGVIKIFTIAVTIVVVAVPEGLPLAVTLTLAYSMRKMMADKALVRRLSACETMGSATTICSDKTGTLTLNQMTVVEAYVGRKKIINLPDDSSNLHPDVLSLINEGIAQNTSGNVFEPKGDGEAEVSGSPTEKAILSWALKLGMKFGLIRSSSKILHVFPFNSEKKRGGVAVKLGDSGVHIHWKGAAEIVLASCTQYLDSNGLLQSIDEEKDFFKEAIDDMAARSLRCVAIAYRSYEMDKVPSYEDDLAQWSLPEHELVLLAIVGIKDPCRPGVKDAVKVCTDAGVKVRMVTGDNIQTARAIAFECGILSSNEDVVEPNVIEGKKFRALTEKEREQVAKQITVMGRSSPNDKLLLVQALRKGGEVVAVTGDGTNDAPALHEADIGLSMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINVVAAISSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMHRSPVGRREPLITNVMWRNLLVQALYQVIVLLVLNFHGDKILQIHDSRAHRFQVKNTLIFNAFVLCQIFNEFNARKPDEMNVFRGVTKNRLFIGIVGITFVLQILIIEFLGKFTKTVRLNWTLWLVSICIGFVSWPLALVGKLIPVSKTPWSRYMMKPWRRFRKPRAMQ 1088
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto1g0039 1088 PRINTS Sodium/potassium-transporting ATPase signature 237 257 - -
Sto1g0039 1088 PRINTS Sodium/potassium-transporting ATPase signature 487 508 - -
Sto1g0039 1088 PRINTS Sodium/potassium-transporting ATPase signature 614 632 - -
Sto1g0039 1088 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 501 699 IPR023299 GO:0000166
Sto1g0039 1088 Gene3D - 202 1053 - -
Sto1g0039 1088 MobiDBLite consensus disorder prediction 1 23 - -
Sto1g0039 1088 Gene3D - 61 115 - -
Sto1g0039 1088 PANTHER CALCIUM-TRANSPORTING ATPASE 49 1079 - -
Sto1g0039 1088 Gene3D - 491 847 IPR023214 -
Sto1g0039 1088 Gene3D - 504 702 IPR023299 GO:0000166
Sto1g0039 1088 Pfam haloacid dehalogenase-like hydrolase 491 816 - -
Sto1g0039 1088 ProSitePatterns E1-E2 ATPases phosphorylation site. 496 502 IPR018303 -
Sto1g0039 1088 SUPERFAMILY Calcium ATPase, transmembrane domain M 153 1068 IPR023298 -
Sto1g0039 1088 Gene3D - 177 370 - -
Sto1g0039 1088 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 430 525 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Sto1g0039 1088 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 768 882 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Sto1g0039 1088 Pfam Ca2+-ATPase N terminal autoinhibitory domain 49 92 IPR024750 GO:0005516
Sto1g0039 1088 Pfam Cation transporting ATPase, C-terminus 887 1063 IPR006068 -
Sto1g0039 1088 PRINTS P-type cation-transporting ATPase superfamily signature 318 332 - -
Sto1g0039 1088 PRINTS P-type cation-transporting ATPase superfamily signature 494 508 - -
Sto1g0039 1088 PRINTS P-type cation-transporting ATPase superfamily signature 695 706 - -
Sto1g0039 1088 PRINTS P-type cation-transporting ATPase superfamily signature 717 727 - -
Sto1g0039 1088 PRINTS P-type cation-transporting ATPase superfamily signature 802 821 - -
Sto1g0039 1088 PRINTS P-type cation-transporting ATPase superfamily signature 826 838 - -
Sto1g0039 1088 SFLD p-type atpase 476 854 IPR044492 -
Sto1g0039 1088 Pfam Cation transporter/ATPase, N-terminus 153 219 IPR004014 -
Sto1g0039 1088 TIGRFAM ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type 147 1065 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Sto1g0039 1088 CDD P-type_ATPase_Ca_PMCA-like 176 935 - -
Sto1g0039 1088 SUPERFAMILY HAD-like 492 907 IPR036412 -
Sto1g0039 1088 PANTHER CATION TRANSPORTING ATPASE 49 1079 - -
Sto1g0039 1088 SMART Cation_ATPase_N_a_2 150 224 IPR004014 -
Sto1g0039 1088 MobiDBLite consensus disorder prediction 1 39 - -
Sto1g0039 1088 Pfam E1-E2 ATPase 271 472 - -
Sto1g0039 1088 SUPERFAMILY Calcium ATPase, transduction domain A 272 367 IPR008250 -
Sto1g0039 1088 SFLD Haloacid Dehalogenase 476 854 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto1g0039 Sto-Chr1 255746 267873 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto1g0039 5 1085 Primary Pumps ATPases AT3G21180 74.589 0.0 1622
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto1g0039 K01537 - gmx:100777845 1701.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto1g0039 1 255746 267873 Sto1g0039 1 255746 267873 ECH