Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto1g0019 ATGGCAACTGAGAGACCTATGAGAATCGTAGAAAGCAGCCAAACTAGTAAATGGTTTTCCTCGAACTCGAAGGATATTTCAGCATTTGgatcttcatttaaaaataaggcAAACGAAGAGttggaaatttttttgaagggGCAGAAGTTTAGTCATGGACAAACGGACTTTATTCCTAGTAGAAGTGGTAGTGCTCCACCAAGTATGGAGGGTTCAGTTGCAGCAGCTGGAAATATGTTACCTGTGAAGGATTATAGTCTGATTTCAAATTCAGGTAGCTTGGGAAATGCTCTTGAGAATCACAAGTCTGAAGGAAAGCCATTTAATCCTTCTTATGTTGCATATTGCTCCTCGGAGCTCAACATAGATCCCAAACTCCCTCCACGGCACCTGCAAAGTCAAATTGGTAATTATAAAGTAAATCAAGGCATTACTTCTTCTGATAATTGTGGCACAGCTTCCCTTTCTATTGATGAGGGGCCTGATAAAAAGGGTTCACCTAAGCAAGCTTCAGAAAGTTTGTTCAATGCAGGTAGTACACCTAAGCCAGGACAGAATGCAGCTCTGTCGGCTAGTCTTCACAAAAGCTTGGTGGATTTGATACAGGAAGACTTCCCCCGTACCCCTTCCCCTGTCTTTAACCAATCTCATTTATCAAGTCATGCCACAACCGAGGATTCAATTGATATTGATGTGCATGCAACTTCATCAAGTGTTTCTTCAGTAGATTTATCAAACCAGTCAGACTCAGCTACCTGTTCTACTAGTGTTGTCGAGATAGGCACCCTGAACATAGATGCTTCTGAGTTAATATCGAATGAAGTATCTCTGGAAAACTTCCCAAGCTTGCAGCATGCTGATGGAAACCAAAGCCTGCTAGAGGATTCAACATTTAACAAAGATGCTGTGCCAAAGGATTATGTATCAATAAATGGAGTTATGCATGCAGGGGAGCATAAATTAAGAGCATCTAATGTTAGAAGACAAAAACAAGAAGAACAATATTATGGTAGGAATAAACAAAATCAATCCTTTACTCACGGCTATGCTTATCAAGTTCCTGGTGCGGGGTCACAAGTAATTTCTCAAGGGATGAACTATTCACAAAGTTACTTGGGAATGCTTGCTTATAGTCAATCACAGTTTTCATCTCCTGGGATACAATCATCATTGCCTTCGCCTGGACCTACTGGTCCCTTGTATGCAACTCCATCAGCATTTGTGACTTCAGGAAACCCATTTTATCCTAATTTTCAGCCATCTGGTGTATTCTCTCCGCAATATAGTTTAGGTGGATATGCTTTAAGTCCTACATCAGTTCTGCCATATATGGCTGGGTATTCTTCTCACTGTGACCTAACTCTTCCATTCGAAGCTGCAGGCCATCAGGACCTGAGTGGTCAGGCTACCGGTGTCTCAACAGTAGAGGGGGTTCCAAATGCAAGCGATTTTCATAATCGAAGCAAGATTTATGGGCACTACGGATTATCACTGCAGCCTTCATATGCTAATCCACTCAATATGCAATATTATCCCCACTCTTTTGGTAATGCATATTCTGCTGCTATTCAGCAGAATTCATTGACATCAAGAACTCTGAGTGGAGGACAGGTCTGTTCTTCAGTTTCACAGCAAGATTCAGCTGTTCCGGCCTATCTAAATTGTCAGAAATTTCAGTCTCCACTACATGGTAGCATGAACGTTCCAAGTTCAAAAAATATGGGGATCTCTGGAACTAGCTATTTTGGAGACTCAAGTTTGGGTGTCATGACACAGTTTCCTGCTTTGTCTCTTGGTAGTCCAATCCTTCCATCCTCACCAAGGGGTGGAATTAACCCTTTAAGTGGAAAAAATGAGAAGAAGATGCTACACATTTATGGCAGAAATGCAGGATTTTCTTCTGGACAGAGAGTTAGTAGGAGTTTTGATGACTCCAAGAAGCAATCTTTTCTTGAGGAACTTAAATCCATCAATTCTGGGAAATTTGAACTCTCTGATATAGCAGGGCGTATTATTGAATTCAGCATTGACCAACATGGAAGTCGGTTTATCCAGCTGAAGCTGGAAAGTTGCAGTGCTGAAGAGAAGGCGTCTGTTTTAGAAGAAGTCCTTCCACATGCCTCAAAATTAATGACAGATGTGTTTGGAAATTATGTGATTCAGAAGATTTTTGAGCATGGAAGTCCTGATCAGCGAAAGAAGCTTGCAGATAAACTCTCTGGACAGATTTTACCATTAAGTTTGCAGATGTATGGTTGTCGTGCCCTCGAAGTTATTGAGCTTGATCAGAAGACACTATTAGTGCAAGAGCTTGATGGACATGTCATGAGATGTGTACATGATCAAAATGGAAATCACGTCATACAAAAATGCATAGAATGCATTCCAGTggaaaaaatcaattttattataTCTGCTTTTAAAGGCCAAGTACCCGCTCTTTCTACTCACCCATATGGATGTCGTGTTATTCAGAGAGTTTTGGAGCATTGTTCAGATGAGCAACATATTCAATGCATAGTGGATGAAATCCTGGAATCTGCTTATGTCCTTGCTCAAGACCAGTACGGCAATTATGTGACTCAGCATGTCCTGAAGAGGGGGAAACAACATGAAAAAAGTCAGCTTATAAGAAAATTGACTGGGAAGATTGTACAGCTGAGTCAGCATAAGTATGCTTCTAATGTTATTGAGAAATGCTTGGAGCATGGTGATGCAATTGAGCGAGAGGCCTTGATTGCAGAAATTATTGGGCAACCTATTGAAGGCGATACTTTATTGACAATGATGAAGGACCAGTTCGCAAATTATGTGATCCAGAAAGTTCTCGATATATGCAATGAAAGGCATCGGGAAATACTTCTCAATCATATAAAAGTTCATACAGATGGTTTGAAGAAATACACGTATGGTAAACACATTGTTGCTCGTTATGAGCAACTTGCTGCTCCAGCCCCAGAAGCGGACATGAGAAATCACACACACATAAGTAAGCTAGGGAAAGAGAGATTAACAAGTAGGGTGTATGATATGGATTCAAAGAAGTCTAACAAGATCAGAGAGATTGTTAGGCTTCAGCAAATCCTGAAGAAGTGGAAGAAGGTAGCAagtgcatcatcatcatcgtcatccACAAACACAAACACAACCAGCAATGGTGGAAGTAGCAGCAAAGGCATCAAGTTCTTGAAAAGAACTCTGTCCTTCACGGATGTTTCTTGCAGTGACAACGTGGTCCCAAAAGGGTTTCTTGCTGTTTGCGTAGGGAAGGAGCTCAAGAGATTCATTATCCCTACTCAGTACTTGAGACACCCAGCATTTGAGGTCTTACTGCGAGAAGCCGAAGAGGAATTTGGGTTCCAGCAAGAGGGAGTGCTCAAATTCCCATGCCAACTCTCAACCTTCCAGCACATACTGAAGCTGGTGGAAGACAAAAAACAAGTCCTTTTCTTGCATGACATTGACAATAATGACCTTACTCATCATCCTCAAATTACTCAAATGTGTAGATAG 3513 0.4036 MATERPMRIVESSQTSKWFSSNSKDISAFGSSFKNKANEELEIFLKGQKFSHGQTDFIPSRSGSAPPSMEGSVAAAGNMLPVKDYSLISNSGSLGNALENHKSEGKPFNPSYVAYCSSELNIDPKLPPRHLQSQIGNYKVNQGITSSDNCGTASLSIDEGPDKKGSPKQASESLFNAGSTPKPGQNAALSASLHKSLVDLIQEDFPRTPSPVFNQSHLSSHATTEDSIDIDVHATSSSVSSVDLSNQSDSATCSTSVVEIGTLNIDASELISNEVSLENFPSLQHADGNQSLLEDSTFNKDAVPKDYVSINGVMHAGEHKLRASNVRRQKQEEQYYGRNKQNQSFTHGYAYQVPGAGSQVISQGMNYSQSYLGMLAYSQSQFSSPGIQSSLPSPGPTGPLYATPSAFVTSGNPFYPNFQPSGVFSPQYSLGGYALSPTSVLPYMAGYSSHCDLTLPFEAAGHQDLSGQATGVSTVEGVPNASDFHNRSKIYGHYGLSLQPSYANPLNMQYYPHSFGNAYSAAIQQNSLTSRTLSGGQVCSSVSQQDSAVPAYLNCQKFQSPLHGSMNVPSSKNMGISGTSYFGDSSLGVMTQFPALSLGSPILPSSPRGGINPLSGKNEKKMLHIYGRNAGFSSGQRVSRSFDDSKKQSFLEELKSINSGKFELSDIAGRIIEFSIDQHGSRFIQLKLESCSAEEKASVLEEVLPHASKLMTDVFGNYVIQKIFEHGSPDQRKKLADKLSGQILPLSLQMYGCRALEVIELDQKTLLVQELDGHVMRCVHDQNGNHVIQKCIECIPVEKINFIISAFKGQVPALSTHPYGCRVIQRVLEHCSDEQHIQCIVDEILESAYVLAQDQYGNYVTQHVLKRGKQHEKSQLIRKLTGKIVQLSQHKYASNVIEKCLEHGDAIEREALIAEIIGQPIEGDTLLTMMKDQFANYVIQKVLDICNERHREILLNHIKVHTDGLKKYTYGKHIVARYEQLAAPAPEADMRNHTHISKLGKERLTSRVYDMDSKKSNKIREIVRLQQILKKWKKVASASSSSSSTNTNTTSNGGSSSKGIKFLKRTLSFTDVSCSDNVVPKGFLAVCVGKELKRFIIPTQYLRHPAFEVLLREAEEEFGFQQEGVLKFPCQLSTFQHILKLVEDKKQVLFLHDIDNNDLTHHPQITQMCR 1170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto1g0019 1170 ProSiteProfiles Pumilio homology domain (PUM-HD) profile. 646 982 IPR033133 GO:0003723
Sto1g0019 1170 MobiDBLite consensus disorder prediction 169 188 - -
Sto1g0019 1170 PANTHER PUMILIO HOMOLOG 5 48 984 - -
Sto1g0019 1170 CDD Pumilio 661 977 IPR033712 GO:0003723
Sto1g0019 1170 ProSiteProfiles Pumilio RNA-binding repeat profile. 843 878 IPR001313 GO:0003723
Sto1g0019 1170 ProSiteProfiles Pumilio RNA-binding repeat profile. 806 842 IPR001313 GO:0003723
Sto1g0019 1170 SUPERFAMILY ARM repeat 663 978 IPR016024 -
Sto1g0019 1170 Pfam Pumilio-family RNA binding repeat 781 805 IPR001313 GO:0003723
Sto1g0019 1170 Pfam Pumilio-family RNA binding repeat 849 880 IPR001313 GO:0003723
Sto1g0019 1170 Pfam Pumilio-family RNA binding repeat 810 845 IPR001313 GO:0003723
Sto1g0019 1170 Pfam Pumilio-family RNA binding repeat 707 739 IPR001313 GO:0003723
Sto1g0019 1170 Pfam Pumilio-family RNA binding repeat 927 958 IPR001313 GO:0003723
Sto1g0019 1170 Pfam Pumilio-family RNA binding repeat 670 704 IPR001313 GO:0003723
Sto1g0019 1170 Pfam Pumilio-family RNA binding repeat 742 757 IPR001313 GO:0003723
Sto1g0019 1170 Pfam Pumilio-family RNA binding repeat 884 917 IPR001313 GO:0003723
Sto1g0019 1170 PANTHER RNA BINDING PROTEIN PUMILIO-RELATED 48 984 - -
Sto1g0019 1170 ProSiteProfiles Pumilio RNA-binding repeat profile. 702 737 IPR001313 GO:0003723
Sto1g0019 1170 ProSiteProfiles Pumilio RNA-binding repeat profile. 666 701 IPR001313 GO:0003723
Sto1g0019 1170 ProSiteProfiles Pumilio RNA-binding repeat profile. 770 805 IPR001313 GO:0003723
Sto1g0019 1170 ProSiteProfiles Pumilio RNA-binding repeat profile. 879 914 IPR001313 GO:0003723
Sto1g0019 1170 Pfam Auxin responsive protein 1030 1141 IPR003676 GO:0009733
Sto1g0019 1170 ProSiteProfiles Pumilio RNA-binding repeat profile. 920 956 IPR001313 GO:0003723
Sto1g0019 1170 MobiDBLite consensus disorder prediction 151 188 - -
Sto1g0019 1170 Gene3D - 645 984 IPR011989 -
Sto1g0019 1170 SMART pum_5 879 914 IPR001313 GO:0003723
Sto1g0019 1170 SMART pum_5 806 842 IPR001313 GO:0003723
Sto1g0019 1170 SMART pum_5 666 701 IPR001313 GO:0003723
Sto1g0019 1170 SMART pum_5 738 769 IPR001313 GO:0003723
Sto1g0019 1170 SMART pum_5 770 805 IPR001313 GO:0003723
Sto1g0019 1170 SMART pum_5 921 956 IPR001313 GO:0003723
Sto1g0019 1170 SMART pum_5 843 878 IPR001313 GO:0003723
Sto1g0019 1170 SMART pum_5 702 737 IPR001313 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto1g0019 Sto-Chr1 125671 135201 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto1g0019 1011 1147 Calmodulin-binding Proteins AT2G24400 63.504 2.30e-49 171
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto1g0019 K17943 - rcu:8259955 1003.43