Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g4019 ATGGATAATACTTCAACAAGAAATGCTATGGATAATGCTAAAATTGTCCTTTTAGatgGATATACTTCAAGTCGAATATTTGCTCCTTATTCTGTTTACAAAGGCAAAGCTGCACTCTCTTTGAGCCCTTGTCTTCCAACTTTCACTAAGTTGGAATCTGGGACTGTCATAGTTGATCGCCATGGCTCAATGATGATGATTTTCACACCTGCTGTTGGTGAGCGCAAATATGACTGGGAGAAGAAAcagAGATTCGCTCTCTCAGCAACAGAGGTTGGTTCTTTGATAAGCATGGGCCCCACAGATTCCTGTGAATTCTTTCATGACCCTGCAATGAAGTCAAGTAATGCTGGTCAAGTCAGGAAGAGCTTATCAATCAAGCCTCATGCAGATGGTTCTGGATACTTCATGTCTTTGAATGTTGtcaacaatattttaaaaaccaaagaATTCTTAACTGTTCCAGTCACAACTGCTGAGTTTGCTGTGATGAAGACTGCTTGTAATTTTGCATTGCCACACATTATGGGATGGGATCGTCTGACTCATCAGCAGTCCGGAGGCATGACGACTCATGAATCAAAGATGGCTTCTGCTGTGTCCTGCTCCGCCTCCGAGCTTGCCCCACTCCTGGCGAATGCAACGGGGGCAGCGGAGTACCTGTGCACCCAATTCGACGCAATCTCCAGAAAGCTAAGTGACACCACCTACGCTGTCGACAACACTTACCTTCTCTTCTCCGCCTATCTCGTCTTCGCCATGCAGCTTGGTTTCGCCATGCTCTGTGCCGGTTCCGTCCGAGCCAAGAACACCATGAACATCATGCTCACCAACGTCCTCGACGCTGCTGCTGGAGCCCTCTCCTACTACCTCTTCGGTTACGCCTTCGCCTTCGGATCCCCCTCCAACGCCTTCATCGGTCGCCACTTCTTCTCCCTCCGTCATTTCCCCTCTCCCTCCGCCGACTACAGCTTCTTTCTTTACCAGTGGGCTTTCGCCATAGCTGCCGCCGGAATCACCAGCGGCTCCATCGCTGAGAGAACCCAATTCGTCGCATACCTCATCTACTCCTCCTTTCTCACCGCCTTCGTCTACCCCGTTGTTTCTCATTGGTTCTGGTCCAGTGACGGATGGGCCAGCCCCATACGGGCCCACAATCTTCTATTCGGCTCTGGTGCTATTGACTTCGCCGGTTCCGGCGTCGTTCACATGGTCGGAGGCATAGCCGGCTTGTGGGGCGCCTTCATTGAAGGCCCAAGGATTGGCCGCTTCGACCGCACGGGGCGCTCTGTCGCCTTACGTGGCCACAGCGCATCCCTGGTGGTGCTGGGATCCTTTTTGTTATGGTTCGGGTGGTACGGCTTTAACCCGGGCTCATTCCTCACCATTGTCAAAGGATACGACTCCTCCAACTACTACTACGGTCAATGGAGTGCCATAGGTAGGACAGCTGTAACAACCACATTGGCGGGGTGCACGGCGGCTCTAACCACCCTGTTTGGTAAGCGCTTATTGGCTGGGCATTGGAACGTGATAGACGTGTGTAATGGTCTGCTAGGAGGATTCGCTGCTATAACCTCAGGCTGCTCCGTGGTGGATCCTTGGGCCGCAATCATATGCGGCTTTGTGGGGGCTTGGGTCCTCATCGCCCTCAACAACTTGGCCGAGAAGCTCAAGTACGATGATCCACTAGAGGCCGCCCAACTCCACGGAGGCTGCGGCGCCTGGGGGCTCTTGTTCACGGGGCTCTTTGCCAACCACAAGTACGTGGAGGAGGTGTACGGGAGTGGGAGTAGGAAGGGGTATGGGTTGTTCATGGGAGGGGGTGGCAGGTTATTGGCGGCGCAGGTGGTCGAGGTACTGGTGGTGTGTGGGTGGGTCACGGCCACGATGGGCCCACTGTTCTACGTGCTCAATAAGTTGAAGTTGCTGAGGATATCGAGGGATGATGAGATGGCGGGGATGGACATGACTAGGCATGGTGGCTTTGCATATGCTTACCATGACGATGAGGAGAGCGTTAAGCATTCCTTCATGATGGCAAAGATAGAGCCCGCCACTTCCCCTTCCCCTGCAACTCCTACACCCTAG 2091 0.5246 MDNTSTRNAMDNAKIVLLDGYTSSRIFAPYSVYKGKAALSLSPCLPTFTKLESGTVIVDRHGSMMMIFTPAVGERKYDWEKKQRFALSATEVGSLISMGPTDSCEFFHDPAMKSSNAGQVRKSLSIKPHADGSGYFMSLNVVNNILKTKEFLTVPVTTAEFAVMKTACNFALPHIMGWDRLTHQQSGGMTTHESKMASAVSCSASELAPLLANATGAAEYLCTQFDAISRKLSDTTYAVDNTYLLFSAYLVFAMQLGFAMLCAGSVRAKNTMNIMLTNVLDAAAGALSYYLFGYAFAFGSPSNAFIGRHFFSLRHFPSPSADYSFFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSSFLTAFVYPVVSHWFWSSDGWASPIRAHNLLFGSGAIDFAGSGVVHMVGGIAGLWGAFIEGPRIGRFDRTGRSVALRGHSASLVVLGSFLLWFGWYGFNPGSFLTIVKGYDSSNYYYGQWSAIGRTAVTTTLAGCTAALTTLFGKRLLAGHWNVIDVCNGLLGGFAAITSGCSVVDPWAAIICGFVGAWVLIALNNLAEKLKYDDPLEAAQLHGGCGAWGLLFTGLFANHKYVEEVYGSGSRKGYGLFMGGGGRLLAAQVVEVLVVCGWVTATMGPLFYVLNKLKLLRISRDDEMAGMDMTRHGGFAYAYHDDEESVKHSFMMAKIEPATSPSPATPTP 696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g4019 696 Pfam Ammonium Transporter Family 243 665 IPR024041 GO:0008519|GO:0016020|GO:0072488
Sto13g4019 696 SUPERFAMILY ssDNA-binding transcriptional regulator domain 24 184 IPR009044 GO:0003677|GO:0006355
Sto13g4019 696 TIGRFAM amt: ammonium transporter 240 665 IPR001905 GO:0008519|GO:0016020|GO:0072488
Sto13g4019 696 SUPERFAMILY Ammonium transporter 237 646 - -
Sto13g4019 696 Gene3D Transcriptional Coactivator Pc4; Chain A 18 192 IPR009044 GO:0003677|GO:0006355
Sto13g4019 696 Pfam Whirly transcription factor 32 166 IPR013742 GO:0003697|GO:0006355|GO:0006952
Sto13g4019 696 Gene3D Ammonium transporter AmtB like domains 218 684 IPR029020 -
Sto13g4019 696 ProSitePatterns Ammonium transporters signature. 395 420 IPR018047 GO:0008519|GO:0016020|GO:0072488
Sto13g4019 696 PANTHER AMMONIUM TRANSPORTER 196 691 - -
Sto13g4019 696 PANTHER AMMONIUM TRANSPORTER 196 691 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g4019 Sto-Chr13 40906874 40914367 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g4019 220 695 Inorganic Solute Cotransporters AT1G64780 79.876 0.0 782
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Whirly Sto13g4019 Ammonium_transp 2.8e-136 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g4019 K03320 K07573 zju:107412282 827.009
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto13g4019 13 40906874 40914367 Sto13g4019 13 40906874 40914367 ECH