Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g4013 TTGCTGGCTTCTTATATCGCTGTCTCTGTTTCTGCTATCGATGGTGAATATGCACAGTGCAATTGTGATGAAGAAGGGCTTTGGAGTATACATAATATTCTAGAGAGCCAAAGAGTCAGCGACTTTTTTATTGCCATAGCTTATTTTTCGATCCCCGTTGAACTGCTTTACTTCGTTAGCCGCGCCAACCTTCCGTTCAAATGGGTCTTCCTTCAATTCATTGCATTCATAGTTCTCTGTGGCTTGACGCATTTACTGAATGCTTATACATATTACGGACCTCACTCCTTCCAGTTGGTGCTCTCCCTTACCATTGCTAAACTCCTTACAGCTCTTGTCTCTTGTGCAACCGCAATTACCCTTTTCACTCTGATTCCTCTTCTTCTCAAAATCAAAGTGAGGGAGCTTTTCTTGAAGCAGAACGTGTTGGAATTAGACCAAGAGATTGGAATGATTAAAAGACAAAAGGAAGCAAGCTGGCATGTTCGGATGCTAACAAGAGAAATTAGGAAGTCTCTGGATAAGCATACAATCTTGTACACCACCCTTGTTGAGCTTTCTAAGTCATTGGACTTGCATAACTGTGCTGTTTGGATGCCAAATGAGGGTGGACGAGAAATGTACTTAACCCATGAGTTGAAGACAAGCTCTGCAAAGAATTTTCACAATTCTATTCCCATAAATGACCCAGATGttttagagataagaaaaagtAAAGGGGTGAGTATTTTGAGACCTGAATCAGCCCTAGGAACTGCAAGTAAGGGGGGGTCTGGGGAATCAGGCGCAGTTGCTGCTATTCGCATGCCAATGCTTCatgtttcaaattttaaagGAGGGACGCCAGAGTTGGTTGACACATCGTATGCGATACTGGTTTTGGTTCTTCCAAACACAAACTCTAGGGCTTGGACCCTCCATGAGATGGAGATAGTGGAAGTAGTTGCTGACCAAGTGGCTGTAGCCCTGTCTCATGCATCTGTTCTTGAAGAGTCTCAGATAATGAGACAGAAACTGGCAGAGCAAAACCGAGCATTGCAACAGGCAAGGAAATCATTTCAGAAAGTGATGAGCCATGGAATGCGCAGGCCTATGCATTCCATCTTGGGCTTGGTTTCAATGTTTCAAGAGGACAATTTGAGATCTGAGCAAAAGATGATCATTGACACAATGATGAAAGTTAGCCATGTTCTCTCGAGTTTGATTAATGATATTATGGAAATTTCAGTGAACGATAAAGGAAGCTTCCGGTTAGAGATGAAACCTTTCCATTTACATTTGATGATGAGGGAAGTTGCTTGCATTGCCAAGTGTTTGTGTGTATATAAAGGCTTTGGTTTCAAAATTGAAGTCCAGAAATCTTTACCTGATCTGGTGATAGGGGATGAGGCAAGGGCTTTTCAAGTAATTATGCAAATGATTGGTTATCTATTGAACATATATGATGGAGAAAGGACTCTCGTTTTTCGAGTTTTTCCTGAAAGTGATACTGAGGATAAGGATGATAAATTTTTGGGAATGTGGAGGTCAGGCATGCCAAacgattatgtatatataaaatttgattttcagaTAACTGGTACAAGTTCTCGGTTAGATGAATCAACTTCAATACACTATGCGGGTCGAAGGCATTTCAGCTATGAACCTAAGGAGGGACTAAGCTTTAGCATGTGCAAAACACTGGTGCAGATGATGCAAGGCAatatctgggtatcaccaaacACTCTGGGTTTGGCACAAAGCTCACTTGTTCTCAAGTTTCAGATAGGGCCATCAGTTGGAAGATCCATTTTCGCTCCTAAAGATTCTACGGAGTTCCAGTTCAGAGGCCTGAAGGTTGTTTTaacagatgatgatgatgtaaacCGGATAGTGACGAAGAAGCTTCTTGAGAAGCTGGGTTGTCAAGTAACTGCTGTTTCTTCAGGGTTTGAATGCCTGGGTGCTATAAGTGCGTCTGGTAACACATTCAAAATTATCCTAATGGATCTTCACATGCCTGAAATGGATGGTTTTGAAGTGGCGATGAGGATTCGGAAGTTCCACAGCCGTAACTGGCCCTTGATTATAGCTCTTACAGCAAGTGCAGAAGAAAATGTGATGGATAGATGTCTACAGGTGGGAATGAATGGATTGATTCGAAAACCTATTCTCCTTCATGAGATGGCAGATGAACTTAGAAGAGTCCTGCAACGTGCAGGTGAAAATTTGTGA 2217 0.4051 LLASYIAVSVSAIDGEYAQCNCDEEGLWSIHNILESQRVSDFFIAIAYFSIPVELLYFVSRANLPFKWVFLQFIAFIVLCGLTHLLNAYTYYGPHSFQLVLSLTIAKLLTALVSCATAITLFTLIPLLLKIKVRELFLKQNVLELDQEIGMIKRQKEASWHVRMLTREIRKSLDKHTILYTTLVELSKSLDLHNCAVWMPNEGGREMYLTHELKTSSAKNFHNSIPINDPDVLEIRKSKGVSILRPESALGTASKGGSGESGAVAAIRMPMLHVSNFKGGTPELVDTSYAILVLVLPNTNSRAWTLHEMEIVEVVADQVAVALSHASVLEESQIMRQKLAEQNRALQQARKSFQKVMSHGMRRPMHSILGLVSMFQEDNLRSEQKMIIDTMMKVSHVLSSLINDIMEISVNDKGSFRLEMKPFHLHLMMREVACIAKCLCVYKGFGFKIEVQKSLPDLVIGDEARAFQVIMQMIGYLLNIYDGERTLVFRVFPESDTEDKDDKFLGMWRSGMPNDYVYIKFDFQITGTSSRLDESTSIHYAGRRHFSYEPKEGLSFSMCKTLVQMMQGNIWVSPNTLGLAQSSLVLKFQIGPSVGRSIFAPKDSTEFQFRGLKVVLTDDDDVNRIVTKKLLEKLGCQVTAVSSGFECLGAISASGNTFKIILMDLHMPEMDGFEVAMRIRKFHSRNWPLIIALTASAEENVMDRCLQVGMNGLIRKPILLHEMADELRRVLQRAGENL 738
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g4013 738 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 337 414 IPR036097 GO:0000155|GO:0007165
Sto13g4013 738 CDD REC_ETR-like 612 727 - -
Sto13g4013 738 PANTHER TWO-COMPONENT SENSOR HISTIDINE KINASE 6 734 - -
Sto13g4013 738 Pfam GAF domain 176 323 IPR003018 GO:0005515
Sto13g4013 738 SMART gaf_1 174 333 IPR003018 GO:0005515
Sto13g4013 738 Coils Coil 329 356 - -
Sto13g4013 738 SMART REC_2 612 727 IPR001789 GO:0000160
Sto13g4013 738 Gene3D - 162 334 IPR029016 -
Sto13g4013 738 SMART HisKA_10 349 414 IPR003661 GO:0000155|GO:0007165
Sto13g4013 738 PIRSF Ethylen_sen_hybr_HK 1 738 IPR014525 GO:0004672|GO:0005789|GO:0009723|GO:0038199|GO:0051740
Sto13g4013 738 ProSiteProfiles Response regulatory domain profile. 613 731 IPR001789 GO:0000160
Sto13g4013 738 Pfam Response regulator receiver domain 614 726 IPR001789 GO:0000160
Sto13g4013 738 PANTHER ETHYLENE RECEPTOR 6 734 - -
Sto13g4013 738 Pfam His Kinase A (phospho-acceptor) domain 351 410 IPR003661 GO:0000155|GO:0007165
Sto13g4013 738 Gene3D - 336 414 - -
Sto13g4013 738 SUPERFAMILY CheY-like 608 733 IPR011006 -
Sto13g4013 738 Gene3D - 612 737 - -
Sto13g4013 738 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 403 576 IPR036890 -
Sto13g4013 738 Gene3D - 415 590 IPR036890 -
Sto13g4013 738 CDD HATPase_ETR2_ERS2-EIN4-like 455 586 - -
Sto13g4013 738 CDD HisKA 347 409 IPR003661 GO:0000155|GO:0007165
Sto13g4013 738 SUPERFAMILY GAF domain-like 177 326 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g4013 Sto-Chr13 40881742 40885037 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g4013 14 736 Miscellaneous Gene Families AT3G04580 62.299 0.0 919
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Sto13g4013 GAF 2.2e-11 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g4013 K14509 - gmx:100805023 1137.09
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto13g4013 13 40881742 40885037 Sto13g4013 13 40881742 40885037 ECH