Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g4011 ATGGACCAATCAGTTCTTGATGACATTATCAATCGTCTGCTTGAAGTTCGCGGCCGCCCAGGGAAGCAGGTTCAGCTATCTGAATCAGAGATCCGTCAGCTGTGTCTAGTTTCGAAAGAGGTTTTCTTGCAACAGCCTAATTTATTGGAGCTTGAAGCACCCATTAAGATTTGTGGTGATGTCCATGGTCAATATTCTGATCTATTAAGGCTTTTTGAGTATGGTGGCTTACCTCCTCATGCCAACTATTTGTTTTTGGGGGATTATGTGGATAGAGGGAAACAGAGTTTAGAAACAATATGCCTTCTCCTggcttataaaataaaatatcctGAGAACTTTTTCCTTTTGAGAGGGAACCATGAATGCGCTTCTATAAACCGTATATATGGATTTTATGATGAGTGTAAGAGAAGGTTCAATATAAGAAATCTACAGCGGCCCAATGATGTGCCAGATACAGGTTTGCTTTGTGATCTTCTTTGGTCAGACCCTAGCAAAGATGTTCAGGGTTGGGGAATGAATGACAGGGGAGTTTCATATACATTTGGTGCTGATAAAGTCTCAGAGTTTCTTCAGAAGCATGATCTGGATCTTATTTGTCGTGCTCATCAGGTTGTAGAGGACGGATACGAGTTCTTTGCTAACAGGCAGCTTGTAACAATATTTTCAGCACCGAATTATTGTGGGGAGTTTGACAATGCTGGTGCTATGATGAGTGTTGATGAGACACTAATGTGCTCTTTCCAAATATTAAAGCCCGCTGATAAAAAGCCAAAGCTCAATTTTGGAAGTATGACTACTAAACCGGGAAACACTCCAGCAGGTGTAAAGCCATGGCAGCTATTGAAGGTGAAGGCGCACAACTTTCAATGGAAAAAATCGGACAACATATAG 897 0.4069 MDQSVLDDIINRLLEVRGRPGKQVQLSESEIRQLCLVSKEVFLQQPNLLELEAPIKICGDVHGQYSDLLRLFEYGGLPPHANYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRFNIRNLQRPNDVPDTGLLCDLLWSDPSKDVQGWGMNDRGVSYTFGADKVSEFLQKHDLDLICRAHQVVEDGYEFFANRQLVTIFSAPNYCGEFDNAGAMMSVDETLMCSFQILKPADKKPKLNFGSMTTKPGNTPAGVKPWQLLKVKAHNFQWKKSDNI 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g4011 298 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 1 143 - -
Sto13g4011 298 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 142 279 - -
Sto13g4011 298 Pfam Calcineurin-like phosphoesterase 54 206 IPR004843 GO:0016787
Sto13g4011 298 Gene3D - 142 265 IPR029052 -
Sto13g4011 298 Gene3D - 1 141 IPR029052 -
Sto13g4011 298 PRINTS Serine/threonine phosphatase family signature 54 81 IPR006186 GO:0016787
Sto13g4011 298 PRINTS Serine/threonine phosphatase family signature 83 110 IPR006186 GO:0016787
Sto13g4011 298 PRINTS Serine/threonine phosphatase family signature 116 140 IPR006186 GO:0016787
Sto13g4011 298 PRINTS Serine/threonine phosphatase family signature 196 216 IPR006186 GO:0016787
Sto13g4011 298 PRINTS Serine/threonine phosphatase family signature 218 234 IPR006186 GO:0016787
Sto13g4011 298 SMART pp2a_7 26 256 IPR006186 GO:0016787
Sto13g4011 298 ProSitePatterns Serine/threonine specific protein phosphatases signature. 117 122 IPR006186 GO:0016787
Sto13g4011 298 Pfam Serine-threonine protein phosphatase N-terminal domain 6 52 IPR031675 -
Sto13g4011 298 SUPERFAMILY Metallo-dependent phosphatases 17 259 IPR029052 -
Sto13g4011 298 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 1 143 - -
Sto13g4011 298 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 142 279 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g4011 Sto-Chr13 40868779 40872904 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g4011 33 141 Calmodulin-binding Proteins AT5G63870 35.652 3.06e-17 78.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g4011 K06269 - gmx:100799218 530.406
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto13g4011 13 40868779 40872904 Sto8g0069 8 474987 476814 ECH
Sto13g4011 13 40868779 40872904 Sto13g4011 13 40868779 40872904 ECH