Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g4009 ATGTGCGAGCAACTCAAAAGCCAATACCAATTGTGTGAAGAGATCGGTCGTGGTCGATTCGGCACCATCTTCCGCTGCTTCCACCCTCTCTCCAACCAACTCTTCGCCTGCAAAGTCATCGACAAGCGTCTTCTCACCGATTCCATCGATCGCCAGTGCCTCCACAATGAACCTAAATACATGGCCCTCCTCTCTCCCCACCCTAATATTCTTCAGATTTTCGATGTCTTCGACGACGACCATTCCTTATCCATCGTCCTCCACCTCTGCCAACCCCTCACTCTCTTGGATCGCATCATCAATCGCCCTTTCCTCGAGACTCACGCTGCTTCCATCATCAACCACCTTCTACAAGCAATTGCTCATTGCCATCGTCTAGGCGTAGCCCACCGAGACATCAAGCCCGACAATATTCTCTTCGATTCCGGGAATAATCTCAAGCTCGCAGACTTTGGATCGGCCGAGTGGTTCGGCGACGGACGGAGTATGACTGGTGTGGTTGGGACGCCCCATTACGTGGCGCCGGAGGTATTACTGGGAAGAGACTACAATGAGAAAGTAGATGTTTGGAGTAGCGGAGTGATACTGTACATTATGTTGTCCGGGACTCCACCTTTTTATGGAGAATCCGCACAAGACATTTTCGAGGCTGTGTTGAGGGCTAATCTCAGATTTCCGTCTAGGCTTTTCAGGTCTGTGTCTTCTGCTGCTAAGGATCTCATGAGGAAGATGATTTGCAGGGATCCTTCCAGAAGATTATCAGCAGAGCAAGCCCTGAGGCACCCATGGATCCTGAGTGGAGGAGAGGCAAGTGATGTCAGTTGA 825 0.5079 MCEQLKSQYQLCEEIGRGRFGTIFRCFHPLSNQLFACKVIDKRLLTDSIDRQCLHNEPKYMALLSPHPNILQIFDVFDDDHSLSIVLHLCQPLTLLDRIINRPFLETHAASIINHLLQAIAHCHRLGVAHRDIKPDNILFDSGNNLKLADFGSAEWFGDGRSMTGVVGTPHYVAPEVLLGRDYNEKVDVWSSGVILYIMLSGTPPFYGESAQDIFEAVLRANLRFPSRLFRSVSSAAKDLMRKMICRDPSRRLSAEQALRHPWILSGGEASDVS 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g4009 274 Gene3D Phosphorylase Kinase; domain 1 1 90 - -
Sto13g4009 274 PANTHER PHOSPHOENOLPYRUVATE CARBOXYLASE KINASE 2 3 272 - -
Sto13g4009 274 ProSitePatterns Serine/Threonine protein kinases active-site signature. 128 140 IPR008271 GO:0004672|GO:0006468
Sto13g4009 274 Gene3D Transferase(Phosphotransferase) domain 1 94 273 - -
Sto13g4009 274 ProSiteProfiles Protein kinase domain profile. 9 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sto13g4009 274 CDD STKc_CAMK 8 263 - -
Sto13g4009 274 SUPERFAMILY Protein kinase-like (PK-like) 5 266 IPR011009 -
Sto13g4009 274 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Sto13g4009 274 SMART serkin_6 9 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sto13g4009 274 PANTHER SERINE/THREONINE-PROTEIN KINASE 3 272 - -
Sto13g4009 274 Pfam Protein kinase domain 9 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g4009 Sto-Chr13 40862711 40863629 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g4009 3 272 EF-hand Containing Proteins AT1G50700 40.876 2.18e-76 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Sto13g4009 Pkinase 6.8e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g4009 - K08794 gmx:548089 443.351
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto13g4009 13 40862711 40863629 Sto8g0070 8 479985 480885 ECH
Sto13g4009 13 40862711 40863629 Sto13g4009 13 40862711 40863629 ECH