Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g4005 ATGGCGAATCCATCTGCCTCATACTTCTCTCTCCCTTTTCACATTCAGCAATCCCCGCCATTGCAAATTGCTCCTCCTACTGTTTATCCCTCTCCGCCTCCACTAGCTGCTCTCTATACTCTGCCGCAGGCGCAGCAGCTATTTCAGAGAGATGCACAGATAATTACACCTGAGGCACTTGAGAGCGTTAAGGCTGCCATTGCAAGCAGTGAAATTGAGCACAAATCCGAGACCAAAAAGAAAGCAGTTCCTCGCAAAGCTGCTGGTCAAACGTGGGAGGATCCAACACTTGCAGACTGGCCGGAAAATGATTATCGGCTCTTTTGTGGTGATCTTGGTAATGAGGTGAATGATGATGTTCTTACAAAAGCATTTTCTCGATTTCCTTCCTTTAACATGGCACGAGTTGTCAGAGACAAGCGGACTGGAAAAACGAGGGGCTATGGATTTGTAAGCTTTGCCAATCCCGCTGACCTTGCTGCAGCTCTTAAAGAAATGAACGGTCAGTAA 510 0.4725 MANPSASYFSLPFHIQQSPPLQIAPPTVYPSPPPLAALYTLPQAQQLFQRDAQIITPEALESVKAAIASSEIEHKSETKKKAVPRKAAGQTWEDPTLADWPENDYRLFCGDLGNEVNDDVLTKAFSRFPSFNMARVVRDKRTGKTRGYGFVSFANPADLAAALKEMNGQ 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g4005 169 Gene3D - 45 169 IPR012677 -
Sto13g4005 169 MobiDBLite consensus disorder prediction 74 95 - -
Sto13g4005 169 PANTHER OS02G0622500 PROTEIN 25 169 - -
Sto13g4005 169 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 25 169 - -
Sto13g4005 169 SUPERFAMILY RNA-binding domain, RBD 88 169 IPR035979 GO:0003676
Sto13g4005 169 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 105 169 IPR000504 GO:0003723
Sto13g4005 169 CDD RRM_RBM42 99 168 IPR034215 -
Sto13g4005 169 SMART rrm1_1 106 169 IPR000504 GO:0003723
Sto13g4005 169 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 107 169 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g4005 Sto-Chr13 40828649 40830346 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g4005 107 169 Eukaryotic Initiation Factors Gene Family AT4G34110 34.921 4.93e-07 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g4005 K25079 - vvi:100246648 276.559