Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g4000 ATGCTCATCAATAGAGCATCACACATCATCCATCCAAATCCAACGGCCCAGATTGATGGTTCACTTCTCTTGGGCTTGGCTGCGGAAGCAATGTCTTACGTATTTGCGCGCGCTTACTGtattccttcttcttcatttgtGGTGGTTTGGGCTCAGGAAGACTTCAAACTGAATGGCGAATCCCTAGTTGATGTCACATTGGCACTCATGAAATTGCTCAGCGTATCCCTCTTGTGCCTCACACCTCCCTTCGCTGAAGATAAGTATATGAGACCCCCAAATTCTTTTCATCTATCCACTGTCCAAGATCTGACTGCCTTAATGCAAGCTGCTCCATCAAATTTCAACATCAGAAGCGTTGGACACATGTTTTCATCCCCTGCTGAATGCCTTGATGACATCCCTTTTTCCTCAGTTTCACAAGACGACAAACACTTTCAAGATTCTCCCTTCATCTCTCAGAAATTAAGTGACAACTCTACACATGCTTCCCATTCAGAAATGCATTCTAAGACGTTCATTTCCCATTCCCAGGAAAGTGATGGTATTTCCTGGGGTTCAGATCCATTTCTAGATATTCTTAATTTTCCTGGAAATGTTTCTGTCCAGGATGGTCAGGGGGAAAATGGTTCTTGTTTCATACCTGATGACAGTGCTAAAAAAACTGATTTTGGGGAATGGGTTGAACAGTTAATGTCAGTTGATGATTCTCAGCACCCAAATTGGAGTCAGGTTCTTGGTGACGATGGTGTAACAGCTTCAAAATCAAAGGAAACCGAGGTTCCCCAGCAGCAGCATGTACAATCTGAAGAAGTTAACACCCTTCCTAACTCAGTGTCAACTGCACAACAAACTAAGCCAAGAATGCGTTGGACTCCAGAACTTCACGAGGCTTTTGTGGAAGCAGTTAATCAACTTGGTGGTAGCGAGAAGGCTACACCGAAGGGGGTCTTGAACCTGATGAAAGTCGAGGGCCTTACCATCTATCATGTGAAAAGCCACCTACAGAAGTATAGAACTGCCAGATACAAACCTGAGTCATCAGAAGGAACTTCTGAGAAGTTGACATCAATTGAAGAAATGAAATCTCTAGACTTGAAAACGAGTACGGGGATCACAGAAGCACTGCGGTTGCAAATGGAGTTCCAAAAGCGACTTCATGAACAACTTGAGATTCAAAGAAAGTTGCAGATTGAAATTGAAAACCAAGGGAAGCGTCTCCAGATGATGTTTGAGAAACAGAGAGAAATGGAGGACGGAAAGCTCAAGGGctccacctcctccttggaTGAGCCTTCTGCTCAGCTATCAAATGAGGTTGAGGAGGACAAATCTAACATAAGCATTATCGCTGCAAAAACAAAGCTTAAAGCAGATGACAATTGGAATAAACAAGAAGTCGAAAATGATGAGATTGATGCACCACCTACAAAACGGATGAAGAGTTGA 1449 0.4217 MLINRASHIIHPNPTAQIDGSLLLGLAAEAMSYVFARAYCIPSSSFVVVWAQEDFKLNGESLVDVTLALMKLLSVSLLCLTPPFAEDKYMRPPNSFHLSTVQDLTALMQAAPSNFNIRSVGHMFSSPAECLDDIPFSSVSQDDKHFQDSPFISQKLSDNSTHASHSEMHSKTFISHSQESDGISWGSDPFLDILNFPGNVSVQDGQGENGSCFIPDDSAKKTDFGEWVEQLMSVDDSQHPNWSQVLGDDGVTASKSKETEVPQQQHVQSEEVNTLPNSVSTAQQTKPRMRWTPELHEAFVEAVNQLGGSEKATPKGVLNLMKVEGLTIYHVKSHLQKYRTARYKPESSEGTSEKLTSIEEMKSLDLKTSTGITEALRLQMEFQKRLHEQLEIQRKLQIEIENQGKRLQMMFEKQREMEDGKLKGSTSSLDEPSAQLSNEVEEDKSNISIIAAKTKLKADDNWNKQEVENDEIDAPPTKRMKS 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g4000 482 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 283 343 IPR017930 -
Sto13g4000 482 MobiDBLite consensus disorder prediction 426 442 - -
Sto13g4000 482 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 286 340 IPR006447 GO:0003677
Sto13g4000 482 Coils Coil 373 393 - -
Sto13g4000 482 Pfam MYB-CC type transfactor, LHEQLE motif 372 416 IPR025756 -
Sto13g4000 482 SUPERFAMILY Homeodomain-like 284 340 IPR009057 -
Sto13g4000 482 MobiDBLite consensus disorder prediction 416 442 - -
Sto13g4000 482 Pfam Myb-like DNA-binding domain 288 339 IPR001005 -
Sto13g4000 482 Gene3D - 285 344 - -
Sto13g4000 482 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 82 482 IPR044848 GO:0003700
Sto13g4000 482 PANTHER MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN 82 482 - -
Sto13g4000 482 MobiDBLite consensus disorder prediction 458 482 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g4000 Sto-Chr13 40791797 40796457 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g4000 119 434 G2-like Transcription Factor Family AT3G04450 46.176 1.39e-77 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Sto13g4000 Myb_DNA-binding 1.6e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g4000 - - gmx:100803267 486.493
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto13g4000 13 40791797 40796457 Sto13g3383 13 37104301 37107734 CCT
Sto13g4000 13 40791797 40796457 Sto8g0083 8 560586 572681 ECH
Sto13g4000 13 40791797 40796457 Sto13g4000 13 40791797 40796457 ECH