Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g3998 ATGGCTCCCAACCCAAGGGTCATCAAGGCCTTCAATGCTATGAGGGAGTTAGGATTTTCTCATGATGAGGTGAAACCAGTGTTGCAAAAGCTGATTAGAGTGTACGATACAAGAGCGAACGATGAGAACTGGGAACTAATTGAAAAAGATAACTATCGGACACTTATAGATGCATACTTTGAGTTTAAGGAAGATAAGGAGGCAGAACATAATAGCAAGGCCCCAGTCAGTCATCACAACGGAGAAGGACAAACTCAGAAGTTGCATTCATCAACCATGGTTAATTCAAGACAACTAACATCTGTAAAAGAGAATGAAACACATCCAAATACTTTTGAACAGGAAATTATTGAGTCATCTCAATCTTTAATGAGCAATAAGAGGGCCAAAATTAGTTTATTGGAAACAAATACTGAGAAAGCATCGTCCGCAAGCCATGGTGAAGGGCCAGTTGAAAGGCCTAGCTCTGCTCATATCCGTAGAGGAGATATACTAAGTAATAGTTGTAAGAAAGAGATAATGAAGCCAAAAACTGAGCAGTATAAGTTACAGCTTGGACCCAGTTCAACAGGCTGTACAGCTATTGCTCAAGATGAGAAGCACCACCTTCATTTTCTCAGTGACATAGCAAAAGGTTCAGAAAAGGTGAAAATATCGTTGGTAGACGAATTTGGCAATGAGGAATTGCCAAAGTTTAATTACATACCAGACAATCTTATATATCAAAGTGCTAATGTAAATATCTCACTGGCTCGTATTGCGGATGAGGGTTGCTGTTCAGATTGTTCAGGAAACTGTCTTTCTGCACCATTACCTTGTGCATGTGCTCAAGAAACTGGTGGAGAGTTTGCTTACACTACGCAAGGCTTGTTGAAAGAGGAATTTCTGACAGCTTGTTTGTCTATGAAAAAGGAACCTCAAGACCATCACTTTGTGTACTGTCAAGAGTGCCCGCTGGAAAGGTCTAAGAATGAGTACATGCCTGAGCTTTGCAAAGGGCATCTAATTAGGAAGTTCATTAAGGAGTGTTGGAGGAAATGTGGATGTGATATGCAGTGTGGAAATCGTATTGTGCAACGAGGTTTAAGATGCAAATTGCAGGTGTTCTTTACTCGTGAAGGAAAGGGCTGGGGCGTTAGAACACTAGAAGATTTGCCTAAGGGATCCTTTGTATGTGAATATGTTGGAGAAATATTAACCAACATGGAGTTGTATGAGAGGACTATGCAGAAAAAGAGCAATGACAAACATACTTATCCTGTAACCCTTGATGCAGACTGGGGGTCAGAAGGGGTGTTAAAGGATGAGGAGGCATTATGCTTAGATGCGACATATAATGGAAATGTTGCAAGGTTTATCAATCATAGATGCGCAGATGCAAATTTGATAGACATTCCTGTTGAAGTGGAGACTCCAGATCGCCATTATTATCATCTTGCCTTCTTTACTAACAAGGAAGTGAAAGCACTGGAGGAGGTGACATGGgatTATGGTATTGACTTTGATGATCATGATCACCCTATTAAAGCATTCCGGTGTTGTTGTGGAAGTGCATTCTGCCGTGATAAGAAACGGAAAGTGGAGGCAGAGGCAAAGACAAAACAGCACAGAAAAGGAGCATGCCTACCACTTTACCAAGCACCCTTATCTAGTCAACATCTTTTATCTGAGGTTTTGGAAGCCTCAGAGGAGGAAGAGTCACCTTGGCAACCTCTGAGATGGATCAATCGGGCTGATTTTCTTACTGACGGTCTGGACAGAGACCATGGTTGGGGACCTGCAAGACCTCACTTAGAAGGTCCTTGTTCAGCACAGCCCGACGTTTCTTTCAGGGCCAGGAAGGGCTCCCATCCGTTGAATTTGAACAGAGTCAATCTTGGCCGTTCATAA 1890 0.4212 MAPNPRVIKAFNAMRELGFSHDEVKPVLQKLIRVYDTRANDENWELIEKDNYRTLIDAYFEFKEDKEAEHNSKAPVSHHNGEGQTQKLHSSTMVNSRQLTSVKENETHPNTFEQEIIESSQSLMSNKRAKISLLETNTEKASSASHGEGPVERPSSAHIRRGDILSNSCKKEIMKPKTEQYKLQLGPSSTGCTAIAQDEKHHLHFLSDIAKGSEKVKISLVDEFGNEELPKFNYIPDNLIYQSANVNISLARIADEGCCSDCSGNCLSAPLPCACAQETGGEFAYTTQGLLKEEFLTACLSMKKEPQDHHFVYCQECPLERSKNEYMPELCKGHLIRKFIKECWRKCGCDMQCGNRIVQRGLRCKLQVFFTREGKGWGVRTLEDLPKGSFVCEYVGEILTNMELYERTMQKKSNDKHTYPVTLDADWGSEGVLKDEEALCLDATYNGNVARFINHRCADANLIDIPVEVETPDRHYYHLAFFTNKEVKALEEVTWDYGIDFDDHDHPIKAFRCCCGSAFCRDKKRKVEAEAKTKQHRKGACLPLYQAPLSSQHLLSEVLEASEEEESPWQPLRWINRADFLTDGLDRDHGWGPARPHLEGPCSAQPDVSFRARKGSHPLNLNRVNLGRS 629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g3998 629 CDD SET_SETDB-like 230 498 - -
Sto13g3998 629 MobiDBLite consensus disorder prediction 136 157 - -
Sto13g3998 629 Pfam Ubiquitin-binding WIYLD domain 6 64 IPR018848 GO:0018024
Sto13g3998 629 MobiDBLite consensus disorder prediction 66 93 - -
Sto13g3998 629 Gene3D - 1 65 IPR043017 -
Sto13g3998 629 ProSiteProfiles Pre-SET domain profile. 262 361 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Sto13g3998 629 PANTHER INACTIVE HISTONE-LYSINE N-METHYLTRANSFERASE SUVR1-RELATED 194 531 - -
Sto13g3998 629 PANTHER INACTIVE HISTONE-LYSINE N-METHYLTRANSFERASE SUVR1-RELATED 1 194 - -
Sto13g3998 629 SMART set_7 364 504 IPR001214 GO:0005515
Sto13g3998 629 SUPERFAMILY SET domain 216 521 IPR046341 -
Sto13g3998 629 Pfam SET domain 376 498 IPR001214 GO:0005515
Sto13g3998 629 Gene3D SET domain 209 523 IPR046341 -
Sto13g3998 629 MobiDBLite consensus disorder prediction 77 93 - -
Sto13g3998 629 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 563 IPR025776 -
Sto13g3998 629 SMART preset_2 206 348 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Sto13g3998 629 ProSiteProfiles SET domain profile. 364 498 IPR001214 GO:0005515
Sto13g3998 629 Pfam Pre-SET motif 209 356 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Sto13g3998 629 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUVR2-LIKE PROTEIN 194 531 - -
Sto13g3998 629 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUVR2-LIKE PROTEIN 1 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g3998 Sto-Chr13 40775635 40783321 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g3998 205 521 Su(var)3-9 homologs AT5G04940 27.596 3.26e-31 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Sto13g3998 Pre-SET 2.3e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g3998 - - mtr:MTR_1g080340 648.662
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto13g3998 13 40775635 40783321 Sto13g3998 13 40775635 40783321 CCT
Sto13g3998 13 40775635 40783321 Sto8g0751 8 4730122 4735048 CCT