Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g3980 ATGAGTGGGAAAGATATGAAGGAGCTGGAGGCGACAGAGCTTAGACTAGGCCTACCGGGCAGGAAGGAAGAGTGTGAGAACAAGAATATTGAAGCTAGAAACGTCAACAACAAAAGATCATTGCTTCTCACAGACGATGGAGAGGATGATCTCGTTCTTGCTACAGATGCAAAACCTGATGATGAATTACAAGTCACTGCTCCACCTTCCAAGGCACAAGTAGTAGGATGGCCACCTGTTCGATCATACCGTAAGAACTGTATGCAAtcaaagaagaaggagagtggAGAAGTAGTGTATCTGAAAGTAAGCATGGATGGAGCTCCTTATCTGAGAAAGATTCAATTGAATGTTTACGAGGATTACTCACAACTCTTACAAGCCTTGCAAATTATGTTCAACTTCAAGCTTGGTGTATATTCTGAAACACAAGGCTACAATGGATCTGAATATGTGCCCACTTACCAAGACAAAGATGGGGATTGGATGTTGGTCGGAGACGTTCCATGGGATATGTTCGCTACCTCCTGCAAAAGGCTGAGAATCATGAAAGCATCAGAAGCCAAAGGATTGGGCTGCGCCATATGA 588 0.4235 MSGKDMKELEATELRLGLPGRKEECENKNIEARNVNNKRSLLLTDDGEDDLVLATDAKPDDELQVTAPPSKAQVVGWPPVRSYRKNCMQSKKKESGEVVYLKVSMDGAPYLRKIQLNVYEDYSQLLQALQIMFNFKLGVYSETQGYNGSEYVPTYQDKDGDWMLVGDVPWDMFATSCKRLRIMKASEAKGLGCAI 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g3980 195 PANTHER AUXIN-INDUCED PROTEIN 8 192 - -
Sto13g3980 195 Pfam AUX/IAA family 64 192 IPR033389 -
Sto13g3980 195 ProSiteProfiles PB1 domain profile. 98 185 IPR000270 GO:0005515
Sto13g3980 195 SUPERFAMILY CAD & PB1 domains 94 184 - -
Sto13g3980 195 Gene3D - 92 195 - -
Sto13g3980 195 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 8 192 IPR003311 GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g3980 Sto-Chr13 40675660 40676424 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g3980 92 191 B3 DNA Binding Superfamily AT4G23980 34.000 9.12e-10 55.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Sto13g3980 AUX_IAA 1.7e-52 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g3980 K14484 - zju:107412162 242.662
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto13g3980 13 40675660 40676424 Sto8g0109 8 754589 756609 ECH
Sto13g3980 13 40675660 40676424 Sto13g3980 13 40675660 40676424 ECH