Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g3978 ATGATTAGTTTCCAACTGCTTAAATTCAGGGTAGATACAAGCACTAGAGGCATAGAAAAACCTCTTAACCTTGTTAATCCTAGCAGCCTCAAGCATGTTGAAGCTAATCATTGTGTTGTTGTACATAATGACAGAGTGGTTGGACTGAATAAAGCCCATGCCACCCATATCCGCAGCAAGGTTAAAAACATGGTCAACATCCTCTGTAACCTTGAGACAGTTATCCATTACCCTCAGATCAACAAGATGGAATTCGTGGCAGAACATGTCTTCTGTCATGTGCTCATTCTTCTTCCATTGACAAACACCATAGCCATAAGCCATTACCGAAGGCAATTGGTAGACATCATGGATAGGGTGTTCTCAGTGGATGATATCTCCGACCACTTCTGGTCACCGCCCATACCCACCCATGACTCTTCCGCCATGAATCGAAGCGCCTCCGAGTGGGCTTTCCAGCGCTTCATTCAGGAAACTTCTATTCCCTCTCCGACATCTCGCCCATCTTCTTCCTTCCCTCCTCGTCCAAACAACAACGTTCCCCTTCCCGACAAGGAACAACCCAAGCAGGATCCCTCTCGCAATGTCCCTCCTCCTCCCACTCCCACACCTAACGTTCCCATTGATTCCGAGGAAAACCAGGCTTTCCTTAAGAACAAACTCAATCTCGCCTGCGCTGCCGTCGCCTTCTCTCGGGGTAAGGTATTTAGAAGCAAAGGTGGCTACAACACCTTTGGATCTGGTTCATCTGGAAATGATCCATCTAAATTACCAGATAAAGATGCCAAAACACCCGTTGGAATTCCTTCCTTACCTGCAATGCAGAAGAAACCTGCAGTTGCTagcaagccaacaactagtggATCATCAAGGGAACAGTCAGATGACGATGATATTGAGGGAGAGACTGAGATGACTGAAAATATGGACCCTGCTGATGCAAAACGAGTAAGGAGGATGCTTTCCAATAGGGAGTCAGCCAGACGATCAAGAAGACGAAAGCAGGCTCATCTAACTGAGCTTGAGACACAGGTTTCTCAATTACGAGTTGAAAATTCATCCTTGTTAAAGCGCCTTACTGATGTAAACCAGAAGTACAATGAATCTGGTGTTGACAACAGAGTATTAAAGGCTGACATTGAAACATTAAGAGCAAAGGTGAAGATGGCTGAAGAGACTGTCAAAAGAATTACTGGATTGAACCCAATGTTTCATGCCATGCCCGACATATCATCAATGGGTATGCCATCTTTTGATGGCAGCCCTGATGCATCAGCAGATGCAGCAGTTCCAGTGCAAGATGAGCCAACTCATCACTATTATCAACCTCCTTCTAGTACTCCTCTGTCCAGCCATAATCTGAGAGTGAACAATAGATTGGGAGACGTTCCTTCAAATGAAAATGGGCAGCAGAATGGCGCAGCTGGGAACAAGATGGGAGGAACAGCTTCCCTTCAGAGGGTGGCTAGCCTGGAACATCTTCAGAAGAGAATTCGTGGTGGTGCAGATTCATCTGGACCCCCTTCCAATGGAGACCATTAG 1542 0.4553 MISFQLLKFRVDTSTRGIEKPLNLVNPSSLKHVEANHCVVVHNDRVVGLNKAHATHIRSKVKNMVNILCNLETVIHYPQINKMEFVAEHVFCHVLILLPLTNTIAISHYRRQLVDIMDRVFSVDDISDHFWSPPIPTHDSSAMNRSASEWAFQRFIQETSIPSPTSRPSSSFPPRPNNNVPLPDKEQPKQDPSRNVPPPPTPTPNVPIDSEENQAFLKNKLNLACAAVAFSRGKVFRSKGGYNTFGSGSSGNDPSKLPDKDAKTPVGIPSLPAMQKKPAVASKPTTSGSSREQSDDDDIEGETEMTENMDPADAKRVRRMLSNRESARRSRRRKQAHLTELETQVSQLRVENSSLLKRLTDVNQKYNESGVDNRVLKADIETLRAKVKMAEETVKRITGLNPMFHAMPDISSMGMPSFDGSPDASADAAVPVQDEPTHHYYQPPSSTPLSSHNLRVNNRLGDVPSNENGQQNGAAGNKMGGTASLQRVASLEHLQKRIRGGADSSGPPSNGDH 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g3978 513 PANTHER BASIC LEUCINE ZIPPER 63 117 494 - -
Sto13g3978 513 SMART brlzneu 311 375 IPR004827 GO:0003700|GO:0006355
Sto13g3978 513 PANTHER BZIP TRANSCRIPTION FACTOR 117 494 - -
Sto13g3978 513 MobiDBLite consensus disorder prediction 237 314 - -
Sto13g3978 513 Pfam bZIP transcription factor 314 366 IPR004827 GO:0003700|GO:0006355
Sto13g3978 513 Coils Coil 324 358 - -
Sto13g3978 513 SUPERFAMILY Leucine zipper domain 315 366 IPR046347 GO:0003700|GO:0006355
Sto13g3978 513 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 318 333 IPR004827 GO:0003700|GO:0006355
Sto13g3978 513 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 313 368 IPR004827 GO:0003700|GO:0006355
Sto13g3978 513 Coils Coil 373 400 - -
Sto13g3978 513 Pfam Basic leucine-zipper C terminal 382 502 IPR020983 -
Sto13g3978 513 MobiDBLite consensus disorder prediction 439 479 - -
Sto13g3978 513 MobiDBLite consensus disorder prediction 167 181 - -
Sto13g3978 513 Gene3D - 314 369 - -
Sto13g3978 513 MobiDBLite consensus disorder prediction 192 206 - -
Sto13g3978 513 MobiDBLite consensus disorder prediction 435 488 - -
Sto13g3978 513 MobiDBLite consensus disorder prediction 161 209 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g3978 Sto-Chr13 40651277 40657653 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g3978 117 404 bZIP Transcription Factor Family AT4G02640 43.871 1.14e-48 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Sto13g3978 bZIP_C 2.5e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g3978 K25784 - gmx:100170702 465.692
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto13g3978 13 40651277 40657653 Sto13g3978 13 40651277 40657653 CCT
Sto13g3978 13 40651277 40657653 Sto13g3978 13 40651277 40657653 ECH