Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g3972 ATGGAGCAGTATGAAATACTTGAGCAAATTGGAAAAGGTGCTTTTGGCTCTGCTCTTCTTGTGAGGCATAAGCATGAGAAGAAAAAATATGTGCTGAAGAAAATTCGCCTTGCTCGCCAAACAGAGCGATCTCGTAGATCTGCACATCAGGAGATGGAGCTCATCTCTAAATTGAGAAATCCATTTATTGTGGAGTATAAGGACTCCTGGGTAGAAAAGGGGTGCTATGTGTGCATTATTATAGGTTATTGTGAGGGCGGAGATATGGCGGAAGCTATAAAGAAGGCTAATGGTGTTCTTTTTTCTGAGGAGAAACTTTGTAAGTGGCTTGTTCAACTTCTTATGGCTCTTGACTATTTACACGTCAACCATATTCTTCATCGTGATGTCAAGtgttcaaatatatttttgacaAAAGATCAAGACATACGCCTCGGTGATTTTGGACTTGCCAAAATGTTAACATCAGATGATCTTGCTTCCTCTGTTGTGGGAACTCCTAGTTACATGTGCCCTGAGCTCCTTGCTGATATTCCTTATGGTTCTAAATCAGATATTTGGTCCTTGGCTCAAAAGCCTGCATTTAAAGCATTTGACATACAAGCGTTAATccacaaaattaataaatccaTAGTGGCTCCGCTGCCAACAAAGTATTCTGGTGCATTTCGAGGTCTTGTTAAAAGCATGCTGCGGAAAAATCCTGAGCTTAGACCTAGTGCTGCAGAGCTGCTCGGGCACCCACATCTTCAATCTTATGTTCTCAAGGTCCATCTTAAAATCAATAGCCCCAGGCGAAGTACATTACCAGTTCATTGGCCAGAATCTAACTACATGAAGAGAACTAGATTTTTGGAGTCAGAAGATGATCCTGCTTCCACCATCTACAGGGATAAGCGACATTCTTTCAGCAACGATAGGACTCTTAATCCTAGCATATCTGGTGCAGAGCAAGATTCTGTATGCTCCACCCTTGAAATAGATTGTACCCCAGATCATTTGAATCAACGGTTGGAAGAACTGTGTATTGGAGATAGCCTTGAGATGAGGTCAGTCCGTAAGCCAGTTGTTTCTAGGAGTTCTAGTATTGCCAAGACTCCAAAACTTTCCTCCATAAAGGCTTCTGCCACTCCTAAGAAATCAATGGAGCCCTCAAAGAATTGGGAGTCGCTTCCTGCATCACGCAATGCCAAACAATCAGTCTATACAACTCGGAGAGCTTCACTTCCGTTGCCTACAAGAGGTTCTATTAAACAGTCTTCTCCCAAGCCTGGTATTGGTTTACTTGGCCATATAAAATCTCCAGATATTTCAGTAAACTCTCCTCGAATTGATAAGATAGCTGAATTCCCCTTAGCGTCATATGAGGATCCACTTTTTCCCATCAATAGAACTTCATCAACCTCAGCACAGGGTTCCTCTGGCTCCCCTCCTTGCGGTGATCGTTCAATCATGAAAGATAAATGCACAGTTCAGGTATTTGATAGAACCTCTGTCAGGCCTAGCTTGACAGATGCTTGGGAGGGAATCAAGCTCAATAAGTCTCAGGAAAAGACTGAGGATAAAAGTGGCTCCTCTGATCAAAATGCAACTGCTGGAGCATCAAGCCATGGCTCTTCTGACTTACGCCGTCGGCAGTTTGACACTTCATCATACCAGCAAAGGGCTGAAGCCTTGGAAGGTTTGCTTGAATTTAGTGCAAGATTGCTACAACACGAAAGGTATGAAGAACTTGGGGTTTTGTTGAAACCATTTGGGCCAGGGAAGGTCTCTCCAAGGGAAACTGCTATCTGGTTGAATAGGCTGTGGCTCCTTGGTTCTGAGATAAATGTATTCTCCTTGTATCCATATTTACGCTTTGCATCTGAGAAGGTTAGCTTCTTCGGCCGTCTGAATTCTGTGAATTCTGGCTCTAACTTGTATGGCCATCAAAGCATGCATGCTTCGCAGTGTAGCACTTGTTTGTTTCCTTACAAGGAATACGAGTGTGATAATACAATTACACACCAATTCTTGGCTTTCTCTAATCCTTCTCTTAATCTCTTTGCTATTGATAAGGTTTGTGAAGAAGTGGAGCATGGGAATGATGGAATTTTAGCTATTAAATTTCATCAACTTTCCAGCGATGATCACAGAAGTAGCCATATTCAAGAACAAGCCATGCTCCACCACGCCTTCCAACGCGGAGATTTCAGCTCCGGCGGCGAGGCCATCTCTAATGGGAGTCTTGAAGTACAAATCAACGATCCTGATCAGATTATACTTCCAACAAAACTGAACCACTTCAACTGGCATTGCCAATCCGCTTCCTCCGAGACCTGTCACCAATTTGGTGTCGTCAACAACCACGACGAATTTCTCCGACGCAGCCTCCACCATTTTCTCTCTCAACAGAGCTCCGCCGCGGCCTTTGACCAAATTGAGGTCAGGGTCAACCTCGTCTGCGCCGTCGATGGCCAAATCGAGACGAGGATTGTCGTCGAGGACGGAGAGGGGGATACCAAGAGACCGTGCTTGCTCTTCGGTGCGCTTAGAGGTGGGGACTCCGATAATGTCCTTCAATTCACCGGACTTGAGGAGCTGGCCGAGCTTGGATACGACAAAGGCGGCGGTGGAGCCGGTGCCGAGGCCGAGGACCATGCCGCTGCGGACGTACTCGACGGCTTTGTCGGCGGCGATCTTCTTGAGGTCGTCTTGTGTGAGGACGGGAGCGGAGAGGGCTTTGACGGAGAAGGCGGGTGGTGTGGTGCGGAGTTTGATGAATTTGGGGGCGTGGAGGATAAGGTGGGTGGAGGCATTGTGGTGTGA 2808 0.4541 MEQYEILEQIGKGAFGSALLVRHKHEKKKYVLKKIRLARQTERSRRSAHQEMELISKLRNPFIVEYKDSWVEKGCYVCIIIGYCEGGDMAEAIKKANGVLFSEEKLCKWLVQLLMALDYLHVNHILHRDVKCSNIFLTKDQDIRLGDFGLAKMLTSDDLASSVVGTPSYMCPELLADIPYGSKSDIWSLAQKPAFKAFDIQALIHKINKSIVAPLPTKYSGAFRGLVKSMLRKNPELRPSAAELLGHPHLQSYVLKVHLKINSPRRSTLPVHWPESNYMKRTRFLESEDDPASTIYRDKRHSFSNDRTLNPSISGAEQDSVCSTLEIDCTPDHLNQRLEELCIGDSLEMRSVRKPVVSRSSSIAKTPKLSSIKASATPKKSMEPSKNWESLPASRNAKQSVYTTRRASLPLPTRGSIKQSSPKPGIGLLGHIKSPDISVNSPRIDKIAEFPLASYEDPLFPINRTSSTSAQGSSGSPPCGDRSIMKDKCTVQVFDRTSVRPSLTDAWEGIKLNKSQEKTEDKSGSSDQNATAGASSHGSSDLRRRQFDTSSYQQRAEALEGLLEFSARLLQHERYEELGVLLKPFGPGKVSPRETAIWLNRLWLLGSEINVFSLYPYLRFASEKVSFFGRLNSVNSGSNLYGHQSMHASQCSTCLFPYKEYECDNTITHQFLAFSNPSLNLFAIDKVCEEVEHGNDGILAIKFHQLSSDDHRSSHIQEQAMLHHAFQRGDFSSGGEAISNGSLEVQINDPDQIILPTKLNHFNWHCQSASSETCHQFGVVNNHDEFLRRSLHHFLSQQSSAAAFDQIEVRVNLVCAVDGQIETRIVVEDGEGDTKRPCLLFGALRGGDSDNVLQFTGLEELAELGYDKGGGGAGAEAEDHAAADVLDGFVGGDLLEVVLCEDGSGEGFDGEGGWCGAEFDEFGGVEDKVGGGIVV 935
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g3972 935 SUPERFAMILY Protein kinase-like (PK-like) 1 304 IPR011009 -
Sto13g3972 935 Gene3D Transferase(Phosphotransferase) domain 1 84 265 - -
Sto13g3972 935 MobiDBLite consensus disorder prediction 463 478 - -
Sto13g3972 935 Gene3D Phosphorylase Kinase; domain 1 1 83 - -
Sto13g3972 935 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 1 599 - -
Sto13g3972 935 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Sto13g3972 935 ProSiteProfiles Protein kinase domain profile. 4 250 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sto13g3972 935 PANTHER SERINE/THREONINE-KINASE NEK4 1 599 - -
Sto13g3972 935 MobiDBLite consensus disorder prediction 355 420 - -
Sto13g3972 935 MobiDBLite consensus disorder prediction 355 425 - -
Sto13g3972 935 MobiDBLite consensus disorder prediction 510 547 - -
Sto13g3972 935 MobiDBLite consensus disorder prediction 463 484 - -
Sto13g3972 935 MobiDBLite consensus disorder prediction 525 540 - -
Sto13g3972 935 Pfam Protein kinase domain 4 249 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sto13g3972 935 SMART serkin_6 4 250 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sto13g3972 935 ProSitePatterns Serine/Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672|GO:0006468
Sto13g3972 935 CDD STKc_Nek 3 250 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g3972 Sto-Chr13 40615807 40625191 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g3972 10 267 MAP Kinase Kinase Kinase AT1G53570 30.037 1.50e-30 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Sto13g3972 Pkinase 1.1e-54 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g3972 K08857 - gmx:100804898 964.526
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto13g3972 13 40615807 40625191 Sto13g3972 13 40615807 40625191 CCT
Sto13g3972 13 40615807 40625191 Sto13g3972 13 40615807 40625191 ECH