Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g3960 ATGAATGGTGACGCACATCCACATCTCCACCCAGATTACTCTGAATTCGTCGAAGTTGATCCCACCGGCAGATATGGCCGATACAATGAAATCCTCGGCAAAGGAGCTTCAAAGACTGTATATAGAGCATTTGATGAGTATCAAGGGATTGAAGTTGCTTGGAACCAGGTCAAGCTGTATGATTTCCTTCAAAGCCCTGAAGACCTTGAGAGGCTTTACTGTGAAATTCACCTTCTTAAAACATTGAAGCACAGAAACATTATGAAATTTTACACTTCTTGGGTTGATACTGCAAATAGAAATATCAACTTCGTGACTGAAATGTTTACTTCTGGTACACTCAGACAGTATAGGCTAAAGCATAGGAGAGTGAACATCAGAGCAGTGAAGCATTGGTGTAGACAGATCCTGAGAGGACTTCTCTATCTTCATAGCCATGACCCACCTGTGATCCACAGAGATCTCAAATGtgataatatttttgttaatggAAACCAAGGGGAAGTGAAGATTGGGGATCTTGGCCTGGCAGCTATTCTCAGAAAATCTCATGCTGCTCATTGTGTTGGAACACCTGAGTTCATGGCCCCAGAAGTATATGAAGAGGCATATAATGAACTAGTTGACATATATTCCTTTGGAATGTGCATATTAGAAATGGTCACATTTGAATATCCTTATAGCGAATGCACTCATCCAGCACAAAtctataaaaaagttatttctGGAAAAAAACCAGATGCTTTATATAAAGTAAAGGATCCTGAAGTGAGACAATTTGTTGAGAAATGCTTGGCAACAGTGTCTCTAAGGCTTTCTGCTAGAGAGCTTCTAGACGACCCTTTTCTCCAAATTGATGATTACGAATGTGAATTAAGCAGGGAATTGGATGACTTGGGACCTTTCATTCGGCAGCCATTCCTTGATCTTAATCGAAGCTATAGTAACATGAGTAATGAATACACATATGGTTTTGGCTACGATGCTCCAGGAGACTGGTATTCTCATCCAACTGACATTGAACCTAGTGGAATTGAACTTTTTGAGTACCATGATGATGAATTATCCGAAGATGTTGACATAAGCATCAAGGGCAAGAGGAAAGATGACGGTAGCATCTTTCTGAGACTAAGAATTGCTGATAAAGAAGGTTGGCATTTTCTTACTGTTGGTCGTATCCGAAATATATATTTCCCATTTGACACAGAGACGGACACAGCATTAAGTGTGGCAACTGAAATGGTTGCAGAACTTGATATTACTGATCAGGATGCAACTAGAATAGGAGATATGATAGATGGGGAAATTGCTTCCTTAGTACCTGAATGGAGGCAAGGACCAGGAATTGAGGAAACTCCCCGTTTCACAAATCAAACATTTTGTCACAATTGTGCATCTAATCATACCTCTAGTGGCTCCTTTATGGAATTTCTGTCTCATAATTCAGGCCCCAAGAACTCGCCACTTCTTCAGTGCTGTAAGCATGGATGTGCTTCCATGCATGGGCGGTTTGAGGAGATTACATTTGAGTCTGAGGAATATGGAAATCATGCGAGAGAGGTTGCACCTAACAGAACAAGCCAATCAGAGTGCTTGGAGTATCAAGAATTATGGAATCAGCATGAAAGTCGTGAACTTAGTCCAGTGGAGTCTGAAAACAGCCATTCTGATGAACAGTTAGATAAATCAGTATCAGCTGAAGAAGAGGGACATGATGAAGTTTGGGAAAACAAGTTTGCACCCAATGTAGGAAATCCCCAGCGGAACTTATCAGGAACACATTATTTTAGGGAAATGCGTTGGGAATATTGTGAGCGTGAGGAAGAATGTGAGAAAGAGATCCAACAGGAGATGAGATGGCTCAGAGCAAAGTACCAAATGGAGTTAAGGGAAGTTAGGGATCGACAGCTTGGGCTACCATCGAAATCATCTTCACACAACACAAAGCACGAATCGGAATATGAGATACTGTCACCTCCATTGACAGACACATCAAAAGGAGGAAACAGTGGTTCTAGTTTGCATTCTCATGTCAATATGTGCTGCCCCAATTCGGAGACCCAAAGGGCCCGAAATTGTGAGGCGATGGATTCTCCTGGAAAGAGTTTATACTCAGCCTCATTGCTTCCCCACCCTATACACAGGACAGTTTCCCTCCCTGTTGATGCTGTTGATGTATAA 2181 0.4117 MNGDAHPHLHPDYSEFVEVDPTGRYGRYNEILGKGASKTVYRAFDEYQGIEVAWNQVKLYDFLQSPEDLERLYCEIHLLKTLKHRNIMKFYTSWVDTANRNINFVTEMFTSGTLRQYRLKHRRVNIRAVKHWCRQILRGLLYLHSHDPPVIHRDLKCDNIFVNGNQGEVKIGDLGLAAILRKSHAAHCVGTPEFMAPEVYEEAYNELVDIYSFGMCILEMVTFEYPYSECTHPAQIYKKVISGKKPDALYKVKDPEVRQFVEKCLATVSLRLSARELLDDPFLQIDDYECELSRELDDLGPFIRQPFLDLNRSYSNMSNEYTYGFGYDAPGDWYSHPTDIEPSGIELFEYHDDELSEDVDISIKGKRKDDGSIFLRLRIADKEGWHFLTVGRIRNIYFPFDTETDTALSVATEMVAELDITDQDATRIGDMIDGEIASLVPEWRQGPGIEETPRFTNQTFCHNCASNHTSSGSFMEFLSHNSGPKNSPLLQCCKHGCASMHGRFEEITFESEEYGNHAREVAPNRTSQSECLEYQELWNQHESRELSPVESENSHSDEQLDKSVSAEEEGHDEVWENKFAPNVGNPQRNLSGTHYFREMRWEYCEREEECEKEIQQEMRWLRAKYQMELREVRDRQLGLPSKSSSHNTKHESEYEILSPPLTDTSKGGNSGSSLHSHVNMCCPNSETQRARNCEAMDSPGKSLYSASLLPHPIHRTVSLPVDAVDV 726
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g3960 726 MobiDBLite consensus disorder prediction 636 674 - -
Sto13g3960 726 ProSitePatterns Serine/Threonine protein kinases active-site signature. 150 162 IPR008271 GO:0004672|GO:0006468
Sto13g3960 726 MobiDBLite consensus disorder prediction 658 674 - -
Sto13g3960 726 SMART serkin_6 26 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sto13g3960 726 Gene3D - 355 445 - -
Sto13g3960 726 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK1 8 689 - -
Sto13g3960 726 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 8 689 - -
Sto13g3960 726 Gene3D Phosphorylase Kinase; domain 1 12 107 - -
Sto13g3960 726 ProSiteProfiles Protein kinase domain profile. 26 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sto13g3960 726 Pfam Protein kinase domain 29 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sto13g3960 726 MobiDBLite consensus disorder prediction 542 570 - -
Sto13g3960 726 CDD STKc_WNK 24 283 - -
Sto13g3960 726 Gene3D Transferase(Phosphotransferase) domain 1 109 288 - -
Sto13g3960 726 SUPERFAMILY Protein kinase-like (PK-like) 29 284 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g3960 Sto-Chr13 40563372 40566215 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g3960 1 530 MAP Kinase Kinase Kinase AT3G22420 55.631 0.0 590
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Sto13g3960 Pkinase 1.4e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g3960 K08867 - gmx:100272198 1139.79
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto13g3960 13 40563372 40566215 Sto13g3960 13 40563372 40566215 CCT
Sto13g3960 13 40563372 40566215 Sto13g3960 13 40563372 40566215 ECH