Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g3958 ATGCTTTCTTTTACCTTGCTTTTGATCATAGTGGTGGAAGCTAAGGATGGAACTATTTCTGTGGCTTCTGCATTCGCCGGTCACCAGGAAGCTGTACAGGATAGAGACCACAAGTTCCTAACACAAGCAGTTGAAGAAGCATATAAAGGGGTTGATTGTGGTGATGGAGGTCCATTTGGTGCAGTTGTTGTTCGTAATGACGAAGTAGTTGTAAGCTGTCATAACATGGTTTTAAAACATACTGACCCCACTGCACATGCTGAGGTTACTGCTATACGAGAGGCTTGTAAAAAGTTAAATCAAATTGAGCTATCTGACTGTGAAATGTATGCATCTTGTGAGCCTTGTCCAATGTGCTTTGGTGCAATTCATCTTTCTAGAATAAAGAGATTGGTTTATGGAGCCAAAGCAGAAGCTGCAATAGCAATTGGGTTTGACGCTTTTATTGCAGATGCACTGAGGGGCACTGGTTTTTATCAGAAGGCGCAGTTGGAGATTAAAAAGGCAGATGGCAATGGTGCTGTTATTGCAGAACAAGCACATCATGTGGTTGTTCCATTGAACTCATTTCATCAGGCGCTTACATCTAAGAAAGATCCATGTTCTAAAATCCTCTTCGTTCTACATTTCTCATCCCCATTCCCATATTGCTCAACCAAACTCAATGCTGATCCTTCCTTCAACATTGGTGACAGACACGATCTCATTGTCTCCTCAACCAATCTCTGTATACCAGTATTATCTTCATTTGTCGTCTCCCGCGACCTCTTCCGCCGCGGCTTCATGCTCTCCATTTCATTACCATCATCGTCTTCTTCATTATCTACCTCCACATTGTCGCTTGTGGACGAGTTGGCTCTTGTCAAAACTGGTCTTCAGTTTAGGTCTAACGTGATCGTGGAAGAATGCTACGTCGTTTTGGAGGGAGGTGGTGGCCCATCTGTGCTTCTTGATGTAATCCAGTTTCGAAGGTTATCAAGTATTAAGTTGAAGCTGACGAGATTGTTCTCGTCTGAGAAATCTAGGATACAAGAACACATAGAGATACGACAGAAACAgagttttaaaagaaaaaagaagaaagatttAACCAAACACAACCAAACTTGGCTTGAAACCAGAGCTCCAAGGCTGCCTCTTTCTTCACCACCACCACTAATTCTGAAGGACGGAAGAAAGCGAAAGTTGTCGCTGCAAGCACAAGGGCCATCAAAAAGCAATCTTGGAGGCAAATTCAACGACTTTGGGGGTAAAACAGAGGAAGCGAAGGGGCAGAGGTACGTACAGGGCCAGGGCATTCCGCTCTTCTTCCAATCAAAACAGGACGAAAGCCATGGTTTGGAGAGGTCAGTCCTTAGTCCAACAGCAAAACCCCGTGAGCCCACCATTAGGCTAACCAGCTTGACCACAACCCTTTCATTTCTCTCCCCCATGGCTGCCGAACAATACGACACCGTTTTGCTCGAAGAAGACGACCTCGACGACGACGAATCTCCCGATGAAGGGGAGGACGATGAAGAAAACGAAGCCTCTCTTCCCACTTCTTCCGCTCTTGCCGTCGCCGATGCCTCTACCACCATCACCCTCGCCATACCGTGTTCTTCCATCTTAAACCGTGACAACGTCCCAATTTCGACGTCTGCCGCTTCTACAATCATCGTCGCTGACTCCTCCGATCCAAAATACCAGCGCTTGGaacaaattgaagagaaaaagcCTCTCGACGATTCGCGGAGACTGTTTCAACGCCTTTGGACCGATGAGGATGAGATCGAGCTCTTGCAGGGTTTCCTTGATTACACCGCACAACGAGGATCCTCCCACCATCATGACACCTCTTTGTTCTACGACCAAATCAAGTCTAAGCTTCAGCTTGATTTCAACAAAAACCAGCTTGTCGAGAAGCTCCGAAGGTTGAAGAAGAAATACCGCAATGTTTTAAATAAGATTAGCTCCGGTAAAGAATTGTCCTTCAAGAGCCCTCACGATCATGCTACCTTCGAAATTTCTCGTAAGATCTGGAGCGATTTGGGTTCAATTATGGCTGCGGCCGAAGATAATGCGTTGGACGATGACGAAATTAATCCCAGTCCTCATCTCAGCCAATCAATTGTGAAGAACGAGGTACCAATTGGGAGTTCGGCGGAGAAGAGAACCCCATCGTCACGGAAGCGGTCACGGTCTCGATCAGGGATGAGAGCCGATGAGAAGCGCGAGTTGAATGATGGGGCAGCATCAACCAAAGAATACAACTGTATCAGCAACAGCAACAGCAACAGCAACAGCAATACTAACAATAACTATAACATACCAAAATTGATTGAGGAAACAATGAAGAGCTGTGTATCGCCCTTGTTCAAGGAGTTGTTGAATAGCGTTATGGGAGGTCCTTTTGGGACAATAGGGTTTGGAGGGCTTACATTCAGTCCTATGCCACTGTGTTATAGTGGACCATcgatgatgaagatgaatttGGGGAGTGGGGAAGCGATGGATGAGAAGTGGAGGAAGCAACAGATTCTGGAGTTGGAGGTGTACTCCAAGCGGCTGGAGTTGGTGCAGGATCAGATCAAGGCTTCTCTGGAGGAGTTGCGATCATCGGGAAGATGA 2610 0.4533 MLSFTLLLIIVVEAKDGTISVASAFAGHQEAVQDRDHKFLTQAVEEAYKGVDCGDGGPFGAVVVRNDEVVVSCHNMVLKHTDPTAHAEVTAIREACKKLNQIELSDCEMYASCEPCPMCFGAIHLSRIKRLVYGAKAEAAIAIGFDAFIADALRGTGFYQKAQLEIKKADGNGAVIAEQAHHVVVPLNSFHQALTSKKDPCSKILFVLHFSSPFPYCSTKLNADPSFNIGDRHDLIVSSTNLCIPVLSSFVVSRDLFRRGFMLSISLPSSSSSLSTSTLSLVDELALVKTGLQFRSNVIVEECYVVLEGGGGPSVLLDVIQFRRLSSIKLKLTRLFSSEKSRIQEHIEIRQKQSFKRKKKKDLTKHNQTWLETRAPRLPLSSPPPLILKDGRKRKLSLQAQGPSKSNLGGKFNDFGGKTEEAKGQRYVQGQGIPLFFQSKQDESHGLERSVLSPTAKPREPTIRLTSLTTTLSFLSPMAAEQYDTVLLEEDDLDDDESPDEGEDDEENEASLPTSSALAVADASTTITLAIPCSSILNRDNVPISTSAASTIIVADSSDPKYQRLEQIEEKKPLDDSRRLFQRLWTDEDEIELLQGFLDYTAQRGSSHHHDTSLFYDQIKSKLQLDFNKNQLVEKLRRLKKKYRNVLNKISSGKELSFKSPHDHATFEISRKIWSDLGSIMAAAEDNALDDDEINPSPHLSQSIVKNEVPIGSSAEKRTPSSRKRSRSRSGMRADEKRELNDGAASTKEYNCISNSNSNSNSNTNNNYNIPKLIEETMKSCVSPLFKELLNSVMGGPFGTIGFGGLTFSPMPLCYSGPSMMKMNLGSGEAMDEKWRKQQILELEVYSKRLELVQDQIKASLEELRSSGR 869
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g3958 869 MobiDBLite consensus disorder prediction 747 765 - -
Sto13g3958 869 PANTHER BNAANNG10740D PROTEIN 478 868 - -
Sto13g3958 869 Pfam Cytidine and deoxycytidylate deaminase zinc-binding region 35 134 IPR002125 -
Sto13g3958 869 Coils Coil 629 649 - -
Sto13g3958 869 MobiDBLite consensus disorder prediction 492 517 - -
Sto13g3958 869 MobiDBLite consensus disorder prediction 728 744 - -
Sto13g3958 869 MobiDBLite consensus disorder prediction 696 717 - -
Sto13g3958 869 MobiDBLite consensus disorder prediction 492 510 - -
Sto13g3958 869 Coils Coil 843 863 - -
Sto13g3958 869 SUPERFAMILY Cytidine deaminase-like 29 147 IPR016193 GO:0003824
Sto13g3958 869 PANTHER BNAANNG10740D PROTEIN-RELATED 478 868 IPR007592 GO:0006355
Sto13g3958 869 ProSiteProfiles Cytidine and deoxycytidylate deaminases domain profile. 34 146 IPR002125 -
Sto13g3958 869 MobiDBLite consensus disorder prediction 690 765 - -
Sto13g3958 869 Gene3D Cytidine Deaminase, domain 2 27 183 - -
Sto13g3958 869 Pfam Protein of unknown function, DUF573 581 675 IPR007592 GO:0006355
Sto13g3958 869 ProSitePatterns Cytidine and deoxycytidylate deaminases zinc-binding region signature. 86 123 IPR016192 GO:0008270|GO:0016787
Sto13g3958 869 CDD nucleoside_deaminase 40 146 - -
Sto13g3958 869 MobiDBLite consensus disorder prediction 440 459 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g3958 Sto-Chr13 40546314 40553360 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g3958 515 866 GeBP Transcription Factor Family AT5G28040 48.396 1.41e-91 294
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GeBP Sto13g3958 dCMP_cyt_deam_1 1e-23 CL0109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g3958 - - gmx:100779712 400.593
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto13g3958 13 40546314 40553360 Sto13g3958 13 40546314 40553360 CCT
Sto13g3958 13 40546314 40553360 Sto13g3958 13 40546314 40553360 ECH