Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g3950 atgaagaacatTTTCAAGAAGCTTCACATAGGGAGCAACCACGATCCTAACCGTTCCCATGAAACACCGCCCTCCTCTGTGACCTCATCTTCTTGCGCCTCCGATCACACTACAGTTCCAGTTCAAAATTCCGGAACACCTTTGCCAAGCCCTTCTTCTACTTCTTCATCATCACCTTCCCCCGCTACTCTCCCAGCTGCCGGCACTTCCATTCCCCCACCTGCCGCGTCCAATTTCCAGGACTATTTTTCTTCGGAGGAGGAGTTTCAGGTTCAGCTAGCCCTAGCTATTAGCGCTTCCAATTCGGATTTCCGTGGTGATCCTGAGAAGGATCAGATCCGTGCGGCAACTCTGCTGAGCTTAGGAGGTCATCGAATTCATTCCGCAACGAATAAGGATTACGAGGCGGAGGCACTTTCTAGGCAGTATTGGGAATACAATGTGCTCGACTATGAGGAGAGAGTAGCAGATGGTTTTTATGATGTATACGGGCTCTGTAGCGATGCTGTAATGCAAGGCAAAATGCCATCTCTGTCAGATCTTGAAGGAAAccttggaagttctaactttgaAGTTGTCATGGTTAATAGAACGATTGATCCTGCACTGGAAGAGCTGTTGCAAATTGCCCATTGCATTGCATTAGACTGCCCAGTCACTGAGGTTGGTGTTTTGGTACAAAGGCTTGCTGAACTTGTTACAGGGCATATGGGTGGTCCTGTAAAGGATGCTAATATTATATTGGAAAAATGGATGGAAAGAAGTACAGAGCTAAGGACATCTCTTCACACAAGTGTGTTGCCTCTTGGGTCCATAAATATGGGGCTGTCCAGGCATCGTGCTTTGCTTTTCAAGGTATTAGCTGACAACGTCAAGATGCCTTGTAGACTGGTAAAAGGTAGTCATTACACTGGTGTTGAGGATGATGCTGTCAATATTATAAAGTTGGATGAGGAAAGGGAGTTTTTGGTTGATCTCATGGCTGCTCCGGGAACACTTATTCCAGCCGATTTAAGTGCTAAGGACACTGCCTTTAAGCCATACAACCCCAAGATTCTGCCCAGTTTACAATCCACTCAGGAAACTGGATTTCCTTACTCAAGGCAAATTCCATCTCATGGTGAAGGAAGTAGTCAAAGTTCTGTGAGAAAAGGCAATACGCCTTCCTTTAatggaaaattatattttgagaaGTCAGACATGCTTTCAAAAATGGGTTCTAACAAAGACACTGGCGTTAGTCCTTCTAAAATGCCTGATACAGAAACTCCTCGCCAACTGGAAAATTTGCCCCCATCAGCAGGCACTTCTTTTTACAAAGAGACTCTTGGAATGAATGCTATCGGTGACGGGACAAGACTGAGTGTCAACGTTGTACCATATGGTCAGGATAGCCCAGACAACTCTAGGAACCTTTTTGCAGATCTTAATCCATTCCAGATAAAAGGAACTGGCAAGACCTTTGTACATAACAAACCCGTGGAAAATAAGTCTCCTGAACTTCAAAATACAAGAACTAATACTGTTTCTAGTCGACCCCCAGTACCATTGGTGTGGAAGAATCATTATGCTTACAACGATGTCCCCAGAAAAGTTAACCGTGATTTTAATGAATATAGCCCATCTTTATTTGTTTTGAATAGTCCTTCCATTGCTGAAAAGATGGATCTAAATAGTTCCCAAACATCATACTATACTAATATTGATGAAGACAGAAATACTCGAAATTCGATGCAAGTTACTGGTTCAGCATCTGCTCCTGGTGCAGGTGAGCTGAACAGGGTTGAGGATCTCAAAGAAGATTGTAACAAATGGAATATGGGAAGTTCTCAAAATGACAAGGTAGATGTGGTTAAAGAACATGAGAAcaatgaaattaattttcatgatCGGAGAAAGTGCACGCATGATAGATTCATGGgaagtaatttgaaattaaaggcCCCAGAGAGTCCTAGCTCTTCAGTTGGACAGATATTGGATGATGTAGATGTTGGTGAATGTGAAATTCCATGGGAGGATTTGATTATTGATGAACGAATAGGTCTAGTTCCTGCTTTGTGGTTGTTAGGTTCATATGGTGAGGTATTCCATGCAGACTGGAATGGCACAGAAGTTGCTGTGAAGAAGTTCTTGGATCAGGACTTCTCAGGCGCTGCATTGGCTGAATTCAAGAGAGAAGTACGGATAATGCGTAGATTGCGTCATCCAAATATTGTTCTTTTTATGGGTGCTGTTACCCGTCCTCCCAATCTCTCAATCATTTCGGAGTTTCTTCCAAGAGGAAGCTTGTACAAAATTCTTCATCGTCCTCACTGTCAGATTGATGAGAAGCGTAGAATAAAAATGGCTCTGGATGTGGCAAGGGGCATGAACTGCTTACATACTAGCACACCAACAATTGTTCATCGAGATCTGAAGTCACCAAATCTTTTGGTTGATAATAACTGGAATGTTAAGGTATGTGATTTTGGGTTATCACGCTTGAAGCACAACACATTTTTGTCATCCAAGTCAACTGCTGGAACGCCTGAATGGATGGCTCCAGAAGTTCTCCGCAATGAGCCCTCAAATGAGAAGTGTGACGTATATAGTTTTGGAGTCATCCTGTGGGAGCTTGCCACTCTAAGATTGCCGTGGAGTGGAATGAATCCTATGCAGGTTGTTGGTGCAGTTGGTTTTCAAAATCGTCGCCTGGAAATCCCCAAGGACGTTGATCCTATTGTTGCAAGAATAATTTGGGAATGCTGGCAACAGTAA 2760 0.4221 MKNIFKKLHIGSNHDPNRSHETPPSSVTSSSCASDHTTVPVQNSGTPLPSPSSTSSSSPSPATLPAAGTSIPPPAASNFQDYFSSEEEFQVQLALAISASNSDFRGDPEKDQIRAATLLSLGGHRIHSATNKDYEAEALSRQYWEYNVLDYEERVADGFYDVYGLCSDAVMQGKMPSLSDLEGNLGSSNFEVVMVNRTIDPALEELLQIAHCIALDCPVTEVGVLVQRLAELVTGHMGGPVKDANIILEKWMERSTELRTSLHTSVLPLGSINMGLSRHRALLFKVLADNVKMPCRLVKGSHYTGVEDDAVNIIKLDEEREFLVDLMAAPGTLIPADLSAKDTAFKPYNPKILPSLQSTQETGFPYSRQIPSHGEGSSQSSVRKGNTPSFNGKLYFEKSDMLSKMGSNKDTGVSPSKMPDTETPRQLENLPPSAGTSFYKETLGMNAIGDGTRLSVNVVPYGQDSPDNSRNLFADLNPFQIKGTGKTFVHNKPVENKSPELQNTRTNTVSSRPPVPLVWKNHYAYNDVPRKVNRDFNEYSPSLFVLNSPSIAEKMDLNSSQTSYYTNIDEDRNTRNSMQVTGSASAPGAGELNRVEDLKEDCNKWNMGSSQNDKVDVVKEHENNEINFHDRRKCTHDRFMGSNLKLKAPESPSSSVGQILDDVDVGECEIPWEDLIIDERIGLVPALWLLGSYGEVFHADWNGTEVAVKKFLDQDFSGAALAEFKREVRIMRRLRHPNIVLFMGAVTRPPNLSIISEFLPRGSLYKILHRPHCQIDEKRRIKMALDVARGMNCLHTSTPTIVHRDLKSPNLLVDNNWNVKVCDFGLSRLKHNTFLSSKSTAGTPEWMAPEVLRNEPSNEKCDVYSFGVILWELATLRLPWSGMNPMQVVGAVGFQNRRLEIPKDVDPIVARIIWECWQQ 919
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g3950 919 MobiDBLite consensus disorder prediction 496 513 - -
Sto13g3950 919 PANTHER SERINE/THREONINE-PROTEIN KINASE EDR1 73 919 - -
Sto13g3950 919 Pfam Ethylene-responsive protein kinase Le-CTR1 136 334 - -
Sto13g3950 919 SMART serkin_6 675 909 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sto13g3950 919 CDD STKc_MAP3K-like 691 919 - -
Sto13g3950 919 MobiDBLite consensus disorder prediction 356 388 - -
Sto13g3950 919 PANTHER SERINE-THREONINE PROTEIN KINASE 73 919 - -
Sto13g3950 919 ProSitePatterns Serine/Threonine protein kinases active-site signature. 801 813 IPR008271 GO:0004672|GO:0006468
Sto13g3950 919 MobiDBLite consensus disorder prediction 404 434 - -
Sto13g3950 919 Pfam Protein tyrosine and serine/threonine kinase 691 919 IPR001245 GO:0004672|GO:0006468
Sto13g3950 919 SUPERFAMILY Protein kinase-like (PK-like) 666 918 IPR011009 -
Sto13g3950 919 MobiDBLite consensus disorder prediction 405 434 - -
Sto13g3950 919 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 32 - -
Sto13g3950 919 MobiDBLite consensus disorder prediction 1 79 - -
Sto13g3950 919 Gene3D Transferase(Phosphotransferase) domain 1 761 919 - -
Sto13g3950 919 MobiDBLite consensus disorder prediction 489 513 - -
Sto13g3950 919 Gene3D Phosphorylase Kinase; domain 1 668 759 - -
Sto13g3950 919 MobiDBLite consensus disorder prediction 356 389 - -
Sto13g3950 919 MobiDBLite consensus disorder prediction 17 65 - -
Sto13g3950 919 ProSiteProfiles Protein kinase domain profile. 682 919 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g3950 Sto-Chr13 40464895 40472777 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g3950 1 918 MAP Kinase Kinase Kinase AT1G08720 54.937 0.0 933
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Sto13g3950 PK_Tyr_Ser-Thr 4.6e-55 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto13g3950 13 40464895 40472777 Sto8g0773 8 4897236 4898619 CCT
Sto13g3950 13 40464895 40472777 Sto13g3950 13 40464895 40472777 ECH