Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g3945 ATGGGGTGTGTGATTAGTCGAGAAGCGTCGTCGGAAATAACCTCTGAGGTGAAAAAGGACAGGAGTTTAAGCGCTGAATCGAACAGGAACATAGATGAAGTCTCCGTGAGGAAAGCTGACAGGAACGTGGTTGAGCTTCAGAACGGTGGGAGCCAGAAGGAAGAGAAGGATGCTGATGATGAGGTCCAAGTCCAGCGGCCacggggtggaagaagaagatcaaAGCCAAATCCAAGGCAAAGTAATCCTCCCAAACATTTGCGGGGGGAGCAAGTAGCAGCTGGGTGGCCACCCTGGCTCACGGCAGTGTGTGGGGAAGCACTTAGTGGGTGGATACCTCGGAAGGCTGATACATTTGAGAAAATTGATAAGATTGGGCAAGGAACATATAGCAATGTGTACAAAGCTAAAGACATGTTGACTGGTAAAATTGTTGCACTAAAGAAGGTTCGCTTTGACAATTTGGAACCTGAGAGTGTAAAGTTCATGGCTAGGGAGATTCTTATTTTGCGAAGATTGGATCATCCCAATGTTGTAAAGTTGGAAGGTTTGGTTACATCAAGAATGTCCTGTAGTTTGTATTTGGTGTTTAATTACATGGAGCATGATTTAGCTGGACTTGCTGCAAGCCCAGGAATCAAATTCTCAGAGCCTCAGGTCAAATGTTACATGCAACAACTACTATCTGGACTTGAGCACTGCCATAACCGTCGAGTACTTCACCGTGATATTAAAGGATCAAATCTTCTTATTGACAATGAAGGAATACTTAAGATAGCTGACTTTGGATTGGCCTCTTTCTTTGACCCAAACCGCAAGCACCCCATGACTAATCGTGTAGTTACACTTTGGTATCGACCTCCTGAGTTGCTTCTTGGTGCCACAGAATATGGTGTGGGCGTGGACCTTTGGAGTGCAGGTTGCATTTTAGGAGAGTTATTGGCTGGGAAGCCTATTATGCCAGGTCGCACAGAGGTGGAGCAACTGCATAAGATATACAAACTATGTGGTTCACCTTCAGATGAGTACTGGAAGAAGTCAAAGTTGCCTAATGCTACCTTGTTTAAACCCCGAGAGCCATACAAGAGATGCATAAGAGAGACATTTAAAGATTTTCCACCTTCTGCTCTTATCCTTATTGATACTCTTCTTGCAACTGATCCAACAGAACGGAAGACGGCTTCAGATGCATTAAAAAGTGAGTTCTTTACCACTGAACCATATGCTTGTGATCCTTCTAGTCTTCCAAAATATCCCCCGAGCAAGGAAATGGATGCTAAACGACGTGATGATGAAGCAAGAAGACTACGAGCTGCTGGCAAAGCTCAGGTTGATGGTGTAAAGAAACCGCGAGCACGTGATCGTGCTAAAGCTAATCCTGCTCCCGAAGCAAATGCTGAGCTTCAATCAAATATTGATAGAAGGCGTTTAATCAGTCGTGCAAACGCTAAAAGTAAGAGCGAAAAGTTTCCTCCACCACATCAAGATGGACAACTTGGCTTCCATTTGGCATCTTCAAACCATATTGATTCAGACCACGTCCCTCCTGACGTCTCCTTTAGTTCAACCTCATTTACCTGTTCAAAAGAACCATTTCAGGCTTGGTCAGGTCCCATTGTTGCGCCCCAGCGGAAGAAACATGCTGCAGGTGATACATTGGATTCATCAAAACAACATACAGGTACCCTCAAGGACAACCTTAAAGGCAAGAAATTTTAG 1719 0.4398 MGCVISREASSEITSEVKKDRSLSAESNRNIDEVSVRKADRNVVELQNGGSQKEEKDADDEVQVQRPRGGRRRSKPNPRQSNPPKHLRGEQVAAGWPPWLTAVCGEALSGWIPRKADTFEKIDKIGQGTYSNVYKAKDMLTGKIVALKKVRFDNLEPESVKFMAREILILRRLDHPNVVKLEGLVTSRMSCSLYLVFNYMEHDLAGLAASPGIKFSEPQVKCYMQQLLSGLEHCHNRRVLHRDIKGSNLLIDNEGILKIADFGLASFFDPNRKHPMTNRVVTLWYRPPELLLGATEYGVGVDLWSAGCILGELLAGKPIMPGRTEVEQLHKIYKLCGSPSDEYWKKSKLPNATLFKPREPYKRCIRETFKDFPPSALILIDTLLATDPTERKTASDALKSEFFTTEPYACDPSSLPKYPPSKEMDAKRRDDEARRLRAAGKAQVDGVKKPRARDRAKANPAPEANAELQSNIDRRRLISRANAKSKSEKFPPPHQDGQLGFHLASSNHIDSDHVPPDVSFSSTSFTCSKEPFQAWSGPIVAPQRKKHAAGDTLDSSKQHTGTLKDNLKGKKF 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g3945 572 MobiDBLite consensus disorder prediction 438 475 - -
Sto13g3945 572 Gene3D Transferase(Phosphotransferase) domain 1 202 442 - -
Sto13g3945 572 MobiDBLite consensus disorder prediction 413 432 - -
Sto13g3945 572 MobiDBLite consensus disorder prediction 438 460 - -
Sto13g3945 572 PANTHER OS01G0367700 PROTEIN 51 545 - -
Sto13g3945 572 Pfam Protein kinase domain 119 403 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sto13g3945 572 MobiDBLite consensus disorder prediction 12 40 - -
Sto13g3945 572 MobiDBLite consensus disorder prediction 50 68 - -
Sto13g3945 572 MobiDBLite consensus disorder prediction 536 572 - -
Sto13g3945 572 Gene3D Phosphorylase Kinase; domain 1 106 201 - -
Sto13g3945 572 PANTHER CELL DIVISION PROTEIN KINASE 51 545 - -
Sto13g3945 572 SMART serkin_6 119 403 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sto13g3945 572 MobiDBLite consensus disorder prediction 1 91 - -
Sto13g3945 572 ProSiteProfiles Protein kinase domain profile. 119 403 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sto13g3945 572 SUPERFAMILY Protein kinase-like (PK-like) 114 410 IPR011009 -
Sto13g3945 572 ProSitePatterns Protein kinases ATP-binding region signature. 125 148 IPR017441 GO:0005524
Sto13g3945 572 CDD STKc_CDK9_like 119 403 - -
Sto13g3945 572 ProSitePatterns Serine/Threonine protein kinases active-site signature. 239 251 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g3945 Sto-Chr13 40423965 40428013 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g3945 111 443 Core Cell Cycle Gene Families AT5G10270 52.149 1.17e-121 367
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Sto13g3945 Pkinase 4.6e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g3945 K08819 - gmx:100817289 942.954
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto13g3945 13 40423965 40428013 Sto13g3945 13 40423965 40428013 CCT
Sto13g3945 13 40423965 40428013 Sto8g0143 8 958168 961966 ECH
Sto13g3945 13 40423965 40428013 Sto13g3945 13 40423965 40428013 ECH