Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g3923 ATGGACGAGAAAAAAGACAGTTCATCACCCAAAGGAGTTATAGAAGCGTgcgttaataataataataatggattTGATTGTTCTACTCCCAAAACATTATTTCAGTGGAGCAAGATTTTCAAACATGCGGAGATAGGGTCATTGAAGCGTCTAACCTCCTTCCCTCCTATTAGTGTGCCAAAGATAAGCAAAGGGAAAAGCACAAGAAGCACTAGAGAAAACCCTCTTCCTCTTCTAAGGTCTTCATTGGTGAATTTCAGCCTCTCTCAACTTGAAGATGCAACCAGCAATTTTAGCAATGAGAACATAATTGGAAGGGGTGGTTATTCTGAAGTGTACAAGGGTCGTCTCCAAGATGGAGAACTAATAGCTGTGAAGAGACTGAGTAAAGGGACAGCAGATGAGAGAATAGCCAACTTTCTGTGTGAGCTTGGTATTATTGCTCATGTTGATCATCCTAACACAGCCAAGCTTATTGGATGTGGTGTTGAAGGAGGAATGCACCTTGTCTTCCAACTATCACCACTTGGAAGTTTAGGCTCTCTTCTTCACGGTTCAAATGGGAAAAAATTAGATTGGAGTAAAAGGTATAAGATTGCGGTGGGGATAGCTGATGGTCTCGTGTATCTTCATGAGAGTTGTCCCAGGCGAATCATTCACAGAGATATTAAGGCAGACAATATTCTGCTCACTCACAACTTTGAGCCTCAGATTTGTGACTTTGGGCTGGCGAAGTGGTTACCCAAACAATGGACTCACCATAATGTATCAAAATTTGAAGGCACATTTGGGTATTTTGCACCAGAGTATTGCATGCATGGCATAGTGGACGAGAAAACCGATGTTTATTCTTTCGGGGTTCTGCTTTTGGAGCTTATAACTGGACGCCAAGCTTTGGATCATTTGCAACAGAGTGTGGTGATAtggGCAAGGCCATTGCTTGAGGGTAATAATATTGAAGAGCTAGTTGATCCTTGTCTTGGTGGTAAGTATGAGCCAAAACAGATGGATTCTCTTGTCCTCACTGCATCTCTGTGTGTTGAGCAGTCTCCTATCTTTCGTCCCCGCATGAGTTGCACTACTGCTAAGAGGAGAAGAAAGTGCATTAGAATATGCAAGAGCAAGCCAAAGAGGGTTCTTCAAAACTAA 1149 0.416 MDEKKDSSSPKGVIEACVNNNNNGFDCSTPKTLFQWSKIFKHAEIGSLKRLTSFPPISVPKISKGKSTRSTRENPLPLLRSSLVNFSLSQLEDATSNFSNENIIGRGGYSEVYKGRLQDGELIAVKRLSKGTADERIANFLCELGIIAHVDHPNTAKLIGCGVEGGMHLVFQLSPLGSLGSLLHGSNGKKLDWSKRYKIAVGIADGLVYLHESCPRRIIHRDIKADNILLTHNFEPQICDFGLAKWLPKQWTHHNVSKFEGTFGYFAPEYCMHGIVDEKTDVYSFGVLLLELITGRQALDHLQQSVVIWARPLLEGNNIEELVDPCLGGKYEPKQMDSLVLTASLCVEQSPIFRPRMSCTTAKRRRKCIRICKSKPKRVLQN 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g3923 382 ProSiteProfiles Protein kinase domain profile. 98 382 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sto13g3923 382 ProSitePatterns Serine/Threonine protein kinases active-site signature. 218 230 IPR008271 GO:0004672|GO:0006468
Sto13g3923 382 Gene3D Transferase(Phosphotransferase) domain 1 175 375 - -
Sto13g3923 382 Pfam Protein tyrosine and serine/threonine kinase 101 309 IPR001245 GO:0004672|GO:0006468
Sto13g3923 382 SUPERFAMILY Protein kinase-like (PK-like) 73 358 IPR011009 -
Sto13g3923 382 Gene3D Phosphorylase Kinase; domain 1 60 172 - -
Sto13g3923 382 ProSitePatterns Protein kinases ATP-binding region signature. 104 126 IPR017441 GO:0005524
Sto13g3923 382 PANTHER OS08G0249100 PROTEIN 3 365 - -
Sto13g3923 382 PANTHER RECEPTOR-LIKE CYTOSOLIC SERINE/THREONINE-PROTEIN KINASE RBK2 3 365 - -
Sto13g3923 382 SMART serkin_6 98 353 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g3923 Sto-Chr13 40314187 40315826 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g3923 68 358 Receptor kinase-like Gene Family AT1G53420 43.000 3.36e-69 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Sto13g3923 PK_Tyr_Ser-Thr 3.4e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g3923 - - qsu:112037194 503.442
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto13g3923 13 40314187 40315826 Sto13g3923 13 40314187 40315826 CCT
Sto8g0555 8 3411465 3413201 Sto13g3923 13 40314187 40315826 ECH
Sto13g3566 13 38228984 38230497 Sto13g3923 13 40314187 40315826 ECH
Sto3g0269 3 1804770 1808259 Sto13g3923 13 40314187 40315826 ECH
Sto13g3923 13 40314187 40315826 Sto13g3923 13 40314187 40315826 ECH