Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g3915 ATGGCAGTGGAAGCAGATTATCCGTTCTACGCCTATGCGTATGCGAAAGCCAAACAAGTGTCTGCTGATCCTCACTCTCTCTGTACACAAAATGAGTTGGGAGGAGAATGGaatcataatcataataatGAGATTTGGTGTCCCCAAAACTCCAATAATCAACAATCATCAAATAATCGTGGAGAGTGCAGTGGTGAAGGTAATTTGGAAAGCACACGTGGTGgtccaaatccaaatccaaagaGACGCAGAGGCAAAAGCCGAAAGAATAAGGAGGAAATAGAGAACCAGAGAATGACACACATTGCAGTGGAACGTAATCGTAGAAAGCAGATGAACCactatctctctcttcttcgCTCTCTCATGCCTCACTCCTACGTCCAAAGAGGGGATCAAGCATCCATAATAGGAGGAGCAATCAATTTTGTGAAGGAACTAGAGCAGAGGCTCCAATTCCTGGCAACTGAGGATCAACAAGTATCAGATTTAGACCCCACAATGCCCTTCTCCGAATTCTTCAGCTTTCCTCAGTATACATCTTCTAGTAGTGACATAGAAGTGACAATGGTGGAGAGCCATGCAAATATCAAAATAAGGACAAACAAGAGGCCCACCCAACTGCTCAACCTAGTCTCTGCCTTGCACTCCATCAGCCTCACTATCTTGCATCTCAACGTCACTACCACTCATCACATTGTCCTCTATTCTATCAGTGTCAAGTTAGAAGAAGAATGCAAGATGGGATCAGCCGATGACATTGCAGCAGCACTGCACCAAATGTTGCAAACCATTCAACAAcattcctcctcctcttcttcttcttccacgctTAATCAACATCCCagctaa 852 0.3991 MAVEADYPFYAYAYAKAKQVSADPHSLCTQNELGGEWNHNHNNEIWCPQNSNNQQSSNNRGECSGEGNLESTRGGPNPNPKRRRGKSRKNKEEIENQRMTHIAVERNRRKQMNHYLSLLRSLMPHSYVQRGDQASIIGGAINFVKELEQRLQFLATEDQQVSDLDPTMPFSEFFSFPQYTSSSSDIEVTMVESHANIKIRTNKRPTQLLNLVSALHSISLTILHLNVTTTHHIVLYSISVKLEEECKMGSADDIAAALHQMLQTIQQHSSSSSSSSTLNQHPS 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g3915 283 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 96 147 IPR011598 GO:0046983
Sto13g3915 283 PANTHER HELIX-LOOP-HELIX-LIKE PROTEIN 34 269 - -
Sto13g3915 283 Gene3D - 86 163 IPR036638 GO:0046983
Sto13g3915 283 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 96 160 IPR036638 GO:0046983
Sto13g3915 283 MobiDBLite consensus disorder prediction 46 75 - -
Sto13g3915 283 SMART finulus 102 153 IPR011598 GO:0046983
Sto13g3915 283 MobiDBLite consensus disorder prediction 46 98 - -
Sto13g3915 283 Pfam Helix-loop-helix DNA-binding domain 97 148 IPR011598 GO:0046983
Sto13g3915 283 PANTHER MAX DIMERIZATION, MAD 34 269 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g3915 Sto-Chr13 40245915 40246921 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g3915 87 242 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 60.674 2.17e-63 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Sto13g3915 HLH 5.2e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g3915 - - gmx:100782243 274.633
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto13g3915 13 40245915 40246921 Sto13g3915 13 40245915 40246921 CCT
Sto13g3915 13 40245915 40246921 Sto13g3915 13 40245915 40246921 ECH