Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g3908 ATGGATCATCAAGGGCATAATCAGAACCCAGCTATGGGGGTTGGTGGTGGAGCTCAATTGCCTTATGGTTCGAACCCATACCAGCCAAATCAAACAAATGCAACGTCAGGATCAACCGTAACATCGGTGGGGCTGGGACAACATCAACTTGCTTATCAGCATATTCATCAGCAACAGCAGCAGCAACTTCAGCAACAACTCCAAACCTTTTGGGCAAATCAGTACCAAGAAATTGAGAAGGTGACTGATTTCAAGAATCACAGCCTTCCCTTGGCAAGGATCAAGAAGATAATGAAGGCTGATGAGGATGTTCGAATGATATCAGCTGAAGCACCGGTCATATTTGCGAGGGCATGTGAGATGTTCATATTAGAGTTAACCTTGCGTTCATGGAATCACACCGAAGAGAACAAAAGGAGAACACTTCAGAAGAATGATATTGCAGCAGCTATCACAAGGACTGATATATTTGATTTCTTGGTTGATATAGTCCCCCGGGAGGACTTGAAAGATGAAGTACTTGCTTCAATTCCTAGAGGGACAATGCCTGTTGCAGGGCCTGCTGATACTCTTCCTTACTGCTATATGCCTCCTCAACATGCACCACAAGTTGGCTCGGGTGGTGTCATAATGGGTAAACCCGTGATGGATCCGACTATGTATGCTCAACAGCCTCATCCCTACATGGCACAACAAATGTGGCCTCAACCACCAGAACAACGACAATCATCTCCAGATCATTAG 744 0.4543 MDHQGHNQNPAMGVGGGAQLPYGSNPYQPNQTNATSGSTVTSVGLGQHQLAYQHIHQQQQQQLQQQLQTFWANQYQEIEKVTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVPREDLKDEVLASIPRGTMPVAGPADTLPYCYMPPQHAPQVGSGGVIMGKPVMDPTMYAQQPHPYMAQQMWPQPPEQRQSSPDH 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g3908 247 MobiDBLite consensus disorder prediction 1 40 - -
Sto13g3908 247 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-9 1 247 - -
Sto13g3908 247 Pfam Core histone H2A/H2B/H3/H4 36 151 IPR007125 GO:0003677
Sto13g3908 247 Gene3D Histone, subunit A 50 166 IPR009072 GO:0046982
Sto13g3908 247 SUPERFAMILY Histone-fold 57 160 IPR009072 GO:0046982
Sto13g3908 247 MobiDBLite consensus disorder prediction 23 40 - -
Sto13g3908 247 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 1 247 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g3908 Sto-Chr13 40197930 40198709 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g3908 1 234 CCAAT-HAP5 Transcription Factor Family AT1G08970 65.106 1.10e-91 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Sto13g3908 CBFD_NFYB_HMF 5.3e-18 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g3908 K08066 - gmx:100527803 416.772
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto13g3908 13 40197930 40198709 Sto13g3908 13 40197930 40198709 CCT
Sto13g3908 13 40197930 40198709 Sto8g0167 8 1116318 1117100 ECH
Sto13g3908 13 40197930 40198709 Sto13g3908 13 40197930 40198709 ECH