Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sto13g3885 | ATGGCTTACCGTCCTTTCTCTATTCTACTCATCAGACGCATCTCTCTCTcccccataaaccctaaaccctgtaacATTACTGCCTTCTTTCTCCCTCAGCTGCTGACCTCTAAACCTTTCTCAACAACACAAGACCCTGcctctaaccccaaaccctctaGCCTTTCTGCTCGTCTGAGCTTCGTCTTTGATCAAATCGACGCCATTGAAAAGGAACGCGAACAGAAAGACCAAACACTTCAGCGAATTCGAGCCTGGCGAGAATCTAAGAAGATACAATCGCCACAAAATGATACCAGTGGACAAGAATCAGGATTAGGATCTGCTGCTGGTGTCAACCATAACTCCAATGACGCTGGTTTGGCCGAGTCGAAGCTGGAGGCGACGTGGGAGGGAGAAAAGGGCGGTGAAGTGGTAAATAATGTGGTGGAGGTGGTGCACCCGTGGCCGGAGTGGATTGAATTGATGGAGAGGTTGGTACAGCAGAATTATTTTGATCACAGGAGGAGGGACGAGGATAAACTGGTCCGCGATTTGGGGTTCGATGATGCTGTGGTTGCAGATGATGTGGGATTCGATTTCACTAGGGATTTCAAGAGCGTGCAAACAGCCTGCCTCAATTTTGGGAAAGACCGCTTCGACATATTGAGGTCCTTGTCGAGGCAGGACATTCAAATTTTGGTTGGTTTTGGATGCCCAACTGTGGACAAAAAGGTGGTTTTCTCGGCGAAACTTCTGAGGAAGCATGTCCACCTTGATGAAGGAGATGTCTGTAGTTCCTGCAGTTTGAGAAACTCTTGTGAAAGGGCATATCTGCTTACAAACAAAGAGGATGAGGCACGGACAATTGACATCATGCGGGTCTTATTGGCCTTTGGTTTTGATCCTGTGAATGGATCAACCATCAACAAATCACTTCCAAAGCAGAAGTCTGTGAAAACTGTAGTCCGTAAGTTGCTTCACGAGGTTGTAAAGTTGAGTTCAGTTCCTATAGATCCAAATCTTCCCCCTCCCGTCATTAAAAAGCCTCCACCAAAAGTGAAgcaacctcctcctcctccaaagAAACGAGTTGGACGGGATGATGTGGAGATGAAAAAAGGGGACTGGCTATGTCCAAAGTGTGATTTCTTGAATTTTGCAAAGAATACTGTTTGCTTACAGTGTGATGCCAAACGTCCAAAAAGACAGTTGCTTCCTGGAGAATGGGAATGTCCCGAGTGCAACTTCTTGAATTACAGGAGGAACACTGTATGTTTCCATTGTGAGTGTAAACGCCCACCTGATGAATTTCTGGAGAATAAAATGCAAGATAAACAGCATACATTCAATCCAAGGATGGATAAGATTTCCAGCCGGAAGGAAGTTTCCAATGCTTGGAATTTTGATTTTGACGATGATGAATCAGATGGTGCAGATGTTGCTGCTTTTGAGTATGCAGATGCTCATGCTATAGATGAAGATTTTCCTTTGGATGCCCAGGCTCAACGTGGAAATTTTGGAGGGCGGGAAGGTGATTTTGAGAAAATTAGTAGAGCGCAAGGGTCCCATGATGGAGGATACTCTAATCCTGATCTAAATAGACCTGGAATAGGGTTTGATGATTTTGAGGATGAAGATGATATAGATAGTTATGAGTTAGAGACTCACAGTAATAGTACAAGAGTGAAAGCATCTAAAAGTGATTTTTCTGAAGATGATTCTTCAGGATTGGAAGATATAGAGGACTACGGTGATAAAATGCATGCTCATAAACGAACAGCTTCTAAAAGAAGTGTGCGATCGGGCTCCTATCAAAGGGATACCTCTTTCTCTGGTTCTGACAATGATGATCTCACTTTTGATTCAAACGAACAGCGGTCCTTTCATTCTAATTTTAAATCTAGCCGTGTTTCTGCTGCTGCACAGAAAGGTAAAGGCAGAGGTCCAACCAAGAAATTAAGCTTTGGTTCCGATTCTGATGATGATTTTGTAGGTGGCCTCTATTCTGAGGAGGATGAGGATTTAAATGAGGGATATGCTTCCAGACAAAGTAAAAGGAGCATGCATGGTTCAGGGAGGAGAAACTTCACTAAAGATAGACAGTCTCGCAGAGCAAACTTGTTCAgtgatgatgattatgatggATCATCCCGACAGTCTTATAGTAACAGTAGAGGGCCTCAAGGAAATGTCCGTAATGGTAGAGGGTCTCAAGGAAATGGCCGCAGTTGGCAGAGGTATGGAGACAGGGAGCGAGGCACACAGCAGTATAACAAATCTACTAGGGAAAGAACTGATGGTTCAGGGAGGAGAAACTTCACTAAAGATAGACAGTCTCGCAGAGCAAGCATGTTCAGTGACGATTCTGATGGATCATCCCGGCAGTCTTATAGTAACGGTAGAGGGTCTCGAGGAAATGGCCGAAGTGGGCAGAGGTACGGAGACCGGGAGCGAGGGACACAGCACTATAACAAATCTACTAGGGGAAGATCTGAAAAGAAACAAGGAGGAGGGTTTAACAAATATCATATGGATGAGAAAGATTTTGGTGAATTTAGAAATAGCAAGCGTGTAGATAAAAGATTAATGGCTCCGACAAGGAAATCCAGAAGTGTGAATAAGcggttttcaagtttaaatgAGGCCTCTCCTGATAAAGATGGGGTTAACTTGAATAAAAATAAGCATCGGAAGAAAAAGTTGTCCGATAAATTGGGGTCTCAGTGGAGCAAGGAGGAACTAGAGCGATTTTATGAAGCATACAGGAAGTACGGAAAAGACTGGAAGAAGGTGGCTACTGTTGTACGGAATAGATCCACTGAAATGGTGGAGGCTCTCTACAATATGAATCGGGCATATTTATCTCTTCCGGAGGGGACAGCTTCTGTTGTTGGCCTCATAGCAATGATGACTGATCATTATAATGTGCTGGAAGGGAGTGATAGTGAAAGGGAGAGCAGTGATGCGCCAGGATCTCAAAAGCTGTTGAAACGTAAGCGTGGGAAAGTACATCTTAGTTTCTCAAAAAATTCTGCACAATGTCAACCCATTGCTTCTAATGATGGTTGTCTCTCTTTATTGAAGAGAAGGCACTTTGATGGTAGCCAGCCACGTGCAGTTGGAAAAAGGACACCCCGCATCCCAGTGTCGCACTCTCATAAAAATAGGGAAAATTTTGTTTCGCCTATTAAGAGAAGCCTGAAGTCAGAGAGTCATGCAAATGATGATGAAGTTGCACATGTTGCAGCTCTGGCTTTAACTGAGGCTGCACAAAGAGGGGGCTCTCCTCATATATCTCAAACTAAATACAGAAGAGCAGAGCAGAAATCCTCTCCTGTTGAGAGCTGGTCCAAGACAGCTCGTGCCAAGTTTCAGGGTGCTTCTGCAGATGAAGAGTGGTTGGAAGGTAGTATGGAGAGTGGGGGAGCTGAAAATGGAGAATATGCTAAAGACACTAGTTCCTTGATGGGCATGGAAGGTGTTGGCACAGTTGAAGTACAtcaaaaggggaagaaaatttacagaaagaaagagagagtagAAAATGTTAGAAATCATCAGCTTGATGATGGTGGGGAAGCATGTAGTGGCACTGAAGAAGGACTTTATTTTGATTCCTTGAAGGAAAAAGTTGATGTTGAGGTTACTAATGCAAAACCTGAGCAATCTCCTAAATTTCAGAGGAAAAGAAGCAAGAAACTTTTTTTTGGAGATGAAAGCTCTGCCTTAGATGCTTTGCAAACTTTGGCTGATCTGTCGCTGATGATGCCTGAGTCTACAATGGAATCTGAGTCATCTGTTCAGTTGAAGGAAGAAAGAATGACTGTAGATAAAGATGATAAGTCGGCTTTACCTGAAGCTACATTTACAAGCCAAAATAGAGACAAAACTAAACTCCCAGGTGCAAAACAAAAGGTTCTTCATGCTGTTCCTGGAGTTGAGACTTCAACCTCTAGGAGATCTAAACTTGGGCGGGAGTTCGAAAACGACAATAATGCTTCTGCTGAATCAAAAGAACAGCTTCCACCTTCTGATAGAACGTGGACAAGAAAACGCAAGTCTGTTGTCTCCAAGATATCAAATTCAAAGCTGGATCCTCATCCAAGTTACACCTTGAATAATGAGGCTGCAGTTGATGAGAGCAAACCGATGATTAAAGGAAAACACAGTGGACAGGTGTTTGCTCTACCGAAACAATTGAAGTCAGTCAAATCATCAGACAGTTCGTTGTGTAGTGATCCAAAAGATATAATTGTATCAACTGTAGAAGTTCCACCTGCAAGTGAAGTTAGTTTTCCCAACAAACAAAGAAGTAGACGTAAAATGAGTCCACAGAGAATATTCATGCCACACGAGAAGTCTTGTGAGAACATGTTGAAAAGTCAACCTAGTAAATACTCTACCAACCTCCAAGATAGGGCTTCATATTTAAAGGAAAAGCTTTCTGGTTGCTTGTCTTCATATATGGTTCGCAGATGGTGTACTTTTGAATGGTTTTATAGTGCAATTGATTATCCATGGTTTGCCAAAAGGGAGTTTGTGGAGTACTTAAATCATGTTGGACTAGGGAATATACCAAGGCTAACTCGTGTTGAGTGGAGTGTTATAAAGAGTTCACTTGGTAAACCTCGTAGGTTTTCTGAGCACTTTCTATGCGAAGAAAGACAAAAACTTGAACAGTATCGGGAATCGGTGAGGAAACATTACACTGAACTGCGTACTGGCACCAGGGATGGACTTCCAACAGATTTGGCAAGACCTTTATTTGTTGGACAACGAGTAATTGCTATTCACCCAAAGTCAAGAGAGGTTCATGATGGGAGTGTGCTTACAGTTGACCATGACAAGTGTAGGATTCAGTTTGATCGTCCTGAATTGGGGGTTGAATTTGTCATGGATATTGATTGCATGCCCATGAATCCGTTGGATAATATGCCAGAAGCTCTGAGAAGACAGATTGGTACTGGCAAAGTTTCTTGTATGATGAAACAGCTACATATTAATGAAATTTCTAATTTTGGGGGGTGTGCGCCATGTGCTTCTGGTGTTCCCCAGGAGAAGGTATCTACCCCTTCAAGTACCTTGGTGAAACAGGGAAAGGGGGATGTTAATCATGCCATTGCCCAAGCAAAGGCTAGTACCATTGATAACATTGCTACACTGCAAGAAGCATATGCTCAACCTTGCACACTCACACATCATCAAGCTAGAGAAGCTGATATACGAGCCCTTTCTGAACTGAGTCATGCTTTGGATAAAAAGCTTAGTTATTTGAATTTAGCTGATGTTTTCTTCTTTGGTGGGGAGGGGGTGTTACAGGAAACTTTGTTAATGGAGCTTAGAAATGCAAATAGTGAGATATTGGAAAACCAAAATGACATAGACTGCTTTAAAGATTCAGAGTCTTTCAAGAAGCATTACGCCACGGTTTCTTCAGCTCTGCTTAATTTGAGGCAACGGAATACTTACACAGGAAACTTTCCATCACCATGGGTGAAGCCCCAAGCAAGTTTCAATGTTCACGATGATCCCTGTACATTAGATAGTTCTCTAGCGCAAGAGTTAGGGTCAACTGTTATTGAAATTATCAAAGGATCTAGGCTAAGAGCACATGCCATGGTGGATGCTGCAATTCAGACATTGTCTTCGACCAAAGAAGGTGAAGATGCTTTCATGAGGCAAGGGCAGCTATTGGATTCCGTTGATTATCAGCATTCGGCCTCCAACTCTAGGTTACCTGTAATCAGGTCCCAAGAACAAGTGAATGGAAGTTGTGGCCACCATGATCAGTCGACTTACAGTGCACAAGAACCTTTGCATAGTGATGCTTCTGTTCCAAAATTGCTTAATGATTCTGACAAAGTTGATGCTCAAATTCCATCGGAACTCATCACTTCCTGTGTTGCTACATTGATCATGATTCAGACTTGTACTGAACGACAATACCCTCCAGCTGATGTTGCCCAGATATTAGATTCTGCAGTTAATAGCCTGCATCCGTGCTGTCCTCAAAACCTTCCTATATACAGAGAAATTAAAATGTGCATGGGAAGAATCAAGACCCAGATTTTAGCTCTCATCCCAACTTGA | 6072 | 0.4183 | MAYRPFSILLIRRISLSPINPKPCNITAFFLPQLLTSKPFSTTQDPASNPKPSSLSARLSFVFDQIDAIEKEREQKDQTLQRIRAWRESKKIQSPQNDTSGQESGLGSAAGVNHNSNDAGLAESKLEATWEGEKGGEVVNNVVEVVHPWPEWIELMERLVQQNYFDHRRRDEDKLVRDLGFDDAVVADDVGFDFTRDFKSVQTACLNFGKDRFDILRSLSRQDIQILVGFGCPTVDKKVVFSAKLLRKHVHLDEGDVCSSCSLRNSCERAYLLTNKEDEARTIDIMRVLLAFGFDPVNGSTINKSLPKQKSVKTVVRKLLHEVVKLSSVPIDPNLPPPVIKKPPPKVKQPPPPPKKRVGRDDVEMKKGDWLCPKCDFLNFAKNTVCLQCDAKRPKRQLLPGEWECPECNFLNYRRNTVCFHCECKRPPDEFLENKMQDKQHTFNPRMDKISSRKEVSNAWNFDFDDDESDGADVAAFEYADAHAIDEDFPLDAQAQRGNFGGREGDFEKISRAQGSHDGGYSNPDLNRPGIGFDDFEDEDDIDSYELETHSNSTRVKASKSDFSEDDSSGLEDIEDYGDKMHAHKRTASKRSVRSGSYQRDTSFSGSDNDDLTFDSNEQRSFHSNFKSSRVSAAAQKGKGRGPTKKLSFGSDSDDDFVGGLYSEEDEDLNEGYASRQSKRSMHGSGRRNFTKDRQSRRANLFSDDDYDGSSRQSYSNSRGPQGNVRNGRGSQGNGRSWQRYGDRERGTQQYNKSTRERTDGSGRRNFTKDRQSRRASMFSDDSDGSSRQSYSNGRGSRGNGRSGQRYGDRERGTQHYNKSTRGRSEKKQGGGFNKYHMDEKDFGEFRNSKRVDKRLMAPTRKSRSVNKRFSSLNEASPDKDGVNLNKNKHRKKKLSDKLGSQWSKEELERFYEAYRKYGKDWKKVATVVRNRSTEMVEALYNMNRAYLSLPEGTASVVGLIAMMTDHYNVLEGSDSERESSDAPGSQKLLKRKRGKVHLSFSKNSAQCQPIASNDGCLSLLKRRHFDGSQPRAVGKRTPRIPVSHSHKNRENFVSPIKRSLKSESHANDDEVAHVAALALTEAAQRGGSPHISQTKYRRAEQKSSPVESWSKTARAKFQGASADEEWLEGSMESGGAENGEYAKDTSSLMGMEGVGTVEVHQKGKKIYRKKERVENVRNHQLDDGGEACSGTEEGLYFDSLKEKVDVEVTNAKPEQSPKFQRKRSKKLFFGDESSALDALQTLADLSLMMPESTMESESSVQLKEERMTVDKDDKSALPEATFTSQNRDKTKLPGAKQKVLHAVPGVETSTSRRSKLGREFENDNNASAESKEQLPPSDRTWTRKRKSVVSKISNSKLDPHPSYTLNNEAAVDESKPMIKGKHSGQVFALPKQLKSVKSSDSSLCSDPKDIIVSTVEVPPASEVSFPNKQRSRRKMSPQRIFMPHEKSCENMLKSQPSKYSTNLQDRASYLKEKLSGCLSSYMVRRWCTFEWFYSAIDYPWFAKREFVEYLNHVGLGNIPRLTRVEWSVIKSSLGKPRRFSEHFLCEERQKLEQYRESVRKHYTELRTGTRDGLPTDLARPLFVGQRVIAIHPKSREVHDGSVLTVDHDKCRIQFDRPELGVEFVMDIDCMPMNPLDNMPEALRRQIGTGKVSCMMKQLHINEISNFGGCAPCASGVPQEKVSTPSSTLVKQGKGDVNHAIAQAKASTIDNIATLQEAYAQPCTLTHHQAREADIRALSELSHALDKKLSYLNLADVFFFGGEGVLQETLLMELRNANSEILENQNDIDCFKDSESFKKHYATVSSALLNLRQRNTYTGNFPSPWVKPQASFNVHDDPCTLDSSLAQELGSTVIEIIKGSRLRAHAMVDAAIQTLSSTKEGEDAFMRQGQLLDSVDYQHSASNSRLPVIRSQEQVNGSCGHHDQSTYSAQEPLHSDASVPKLLNDSDKVDAQIPSELITSCVATLIMIQTCTERQYPPADVAQILDSAVNSLHPCCPQNLPIYREIKMCMGRIKTQILALIPT | 2023 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sto13g3885 | 2023 | Coils | Coil | 69 | 89 | - | - | |
| Sto13g3885 | 2023 | MobiDBLite | consensus disorder prediction | 1259 | 1278 | - | - | |
| Sto13g3885 | 2023 | Pfam | Myb-like DNA-binding domain | 901 | 938 | IPR001005 | - | |
| Sto13g3885 | 2023 | CDD | SANT | 903 | 937 | IPR001005 | - | |
| Sto13g3885 | 2023 | MobiDBLite | consensus disorder prediction | 779 | 800 | - | - | |
| Sto13g3885 | 2023 | MobiDBLite | consensus disorder prediction | 1250 | 1365 | - | - | |
| Sto13g3885 | 2023 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 895 | 937 | IPR017930 | - | |
| Sto13g3885 | 2023 | Pfam | Zn-finger in Ran binding protein and others | 400 | 427 | IPR001876 | - | |
| Sto13g3885 | 2023 | Pfam | Zn-finger in Ran binding protein and others | 366 | 394 | IPR001876 | - | |
| Sto13g3885 | 2023 | ProSiteProfiles | Myb-like domain profile. | 901 | 942 | IPR001005 | - | |
| Sto13g3885 | 2023 | SUPERFAMILY | Homeodomain-like | 897 | 946 | IPR009057 | - | |
| Sto13g3885 | 2023 | MobiDBLite | consensus disorder prediction | 706 | 738 | - | - | |
| Sto13g3885 | 2023 | SMART | sant | 899 | 947 | IPR001005 | - | |
| Sto13g3885 | 2023 | MobiDBLite | consensus disorder prediction | 739 | 778 | - | - | |
| Sto13g3885 | 2023 | MobiDBLite | consensus disorder prediction | 592 | 632 | - | - | |
| Sto13g3885 | 2023 | MobiDBLite | consensus disorder prediction | 686 | 705 | - | - | |
| Sto13g3885 | 2023 | MobiDBLite | consensus disorder prediction | 86 | 117 | - | - | |
| Sto13g3885 | 2023 | ProSiteProfiles | Zinc finger RanBP2 type profile. | 399 | 428 | IPR001876 | - | |
| Sto13g3885 | 2023 | MobiDBLite | consensus disorder prediction | 334 | 352 | - | - | |
| Sto13g3885 | 2023 | SMART | DIRP_2 | 1493 | 1594 | IPR033471 | - | |
| Sto13g3885 | 2023 | MobiDBLite | consensus disorder prediction | 92 | 117 | - | - | |
| Sto13g3885 | 2023 | ProSiteProfiles | SANT domain profile. | 898 | 935 | IPR017884 | - | |
| Sto13g3885 | 2023 | SUPERFAMILY | Ran binding protein zinc finger-like | 359 | 395 | IPR036443 | - | |
| Sto13g3885 | 2023 | MobiDBLite | consensus disorder prediction | 1085 | 1113 | - | - | |
| Sto13g3885 | 2023 | PANTHER | PROTEIN ALWAYS EARLY 1-RELATED | 857 | 2023 | IPR028306 | - | |
| Sto13g3885 | 2023 | ProSitePatterns | Zinc finger RanBP2-type signature. | 403 | 422 | IPR001876 | - | |
| Sto13g3885 | 2023 | Pfam | DIRP | 1492 | 1593 | IPR033471 | - | |
| Sto13g3885 | 2023 | MobiDBLite | consensus disorder prediction | 546 | 567 | - | - | |
| Sto13g3885 | 2023 | MobiDBLite | consensus disorder prediction | 804 | 860 | - | - | |
| Sto13g3885 | 2023 | MobiDBLite | consensus disorder prediction | 334 | 362 | - | - | |
| Sto13g3885 | 2023 | SMART | zf_4 | 368 | 392 | IPR001876 | - | |
| Sto13g3885 | 2023 | SMART | zf_4 | 401 | 425 | IPR001876 | - | |
| Sto13g3885 | 2023 | MobiDBLite | consensus disorder prediction | 1313 | 1327 | - | - | |
| Sto13g3885 | 2023 | MobiDBLite | consensus disorder prediction | 512 | 897 | - | - | |
| Sto13g3885 | 2023 | Gene3D | - | 838 | 955 | - | - | |
| Sto13g3885 | 2023 | MobiDBLite | consensus disorder prediction | 864 | 881 | - | - | |
| Sto13g3885 | 2023 | PANTHER | LIN-9 | 857 | 2023 | IPR010561 | GO:0006351|GO:0017053 | |
| Sto13g3885 | 2023 | Gene3D | - | 397 | 428 | - | - | |
| Sto13g3885 | 2023 | Gene3D | - | 358 | 396 | - | - | |
| Sto13g3885 | 2023 | ProSiteProfiles | Zinc finger RanBP2 type profile. | 366 | 395 | IPR001876 | - | |
| Sto13g3885 | 2023 | ProSitePatterns | Zinc finger RanBP2-type signature. | 370 | 389 | IPR001876 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Sto13g3885 | Sto-Chr13 | 40072916 | 40090132 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Sto13g3885 | 6 | 708 | EF-hand Containing Proteins | AT1G55040 | 54.219 | 0.0 | 647 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | MYB-related | Sto13g3885 | DIRP | 5.8e-31 | No_clan |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sto13g3885 | - | - | gmx:100816217 | 1499.18 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Sto13g3885 | 13 | 40072916 | 40090132 | Sto13g3885 | 13 | 40072916 | 40090132 | ECH |