Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g3884 ATGTTTGCTCCAGTAGCAGATACAGGACATGAAAGCAGCGGAGCGTCTGGACCGATTTTGATTCCAAAGCGGTTCGTCTGGCCttacgggggaagaagggtgtttCTAAGTGGTTCTTTCACGAGGTGGTCTGAACATATACCTATGTCTCCAATGGAGGGATGCCCTACCGTATTTCAAGTTACTTGCAGCTTAATGCCTGGATATCATCAGTACAAATTTAATGTGGATGGCGACTGGCGGCATGATGAGCAGCAGCCATTTGTAAGTGGGAGCTATGGGGTAGTAAATACTATTTTCATAACGAGAGAACCAGATATTTTACCTTCCATCTTTATTCCTGAGACACCTGGAAGATCCCACATGGAGGTTGATAGTGATGTATTTGGGCATACTTTTGCATATTGCCAGGACTCTAATTTCAGGATGTCAGAGTCTGATCTGGAGGTCTCTCGCCACCGTATATCTGTGTTCTTGTCGACACACACTGCTTATGAGTTGCTTCCTGAGTCAGGCAAGGTCATTGCCTTGGATATCAATTTACCAGTTAAGCAAGCATTCCATATTCTCTATGAACAGGGTGTACCTATGGCTCCTTTATGGGATTTTCACAAGAGCCAGTTTGTTGGAGTGCTTAGTGCTATGGACTTCATTCTAATATTGAAAGAGcTGGGGAATCATGGGTCAAATTTGACTGAAGAACAACTTGAGACCCATACTATAGCAGCGTGGAAGGAGGGAAAATTTCGACAATGTAGAACAATGGACAATGCGAGATCATATCCCCAGCATTTTGTTCATGCTGGGCCTCATGAGTGTCTGAAAGATGTGGCTTTGAAAATTTTGCAAAACAAGGTGGCAGCGGTTCCTATTATCCATTCCACTTCGCAGGATGGTTCATTTCCTCAGCTGCTACATCTTGCTTCCTTATCAGAAATACTAAAATGTATATGCAGGCACTTTAAGCATTCCTCTGGTTCCTTGCCCATTCTTCATCTGCCAATTGGTTCTATACCTTTGGGTACATGGGTGCCAAAAGTTGGGGAATCAAATAGGCAGCCACTAGCAATGCTCAGGCCAAATGCGTCTCTTGGTGCTGCCCTGTCTCTGTTAATTCAAGCCAACGTTAGCTCAATACCAATTGTTGATGATAATGACTCATTGCTTGACATATATTCAAGAAGTGATATCACTGCATTGGCTAAAGACAAAGCTTATGCGCAGATAACCCTTGATGAAATTAGTATTCATCAGGCATTGCTTTTGGGACAAGATGCAAATTCACCTTATGGCTTTTACAATGGTCAGAGATGTCATATGTGTTTGAGGTCCGATTCATTGCATAAAGTGATGGAACGATTGGCTAATCCTGGGGTTAGAAGAGTTGTGATTGTGGAGCCAGGCAGCAAGCGTGTGGAGGGGATTATTTCATTGAGTGATGTGTTGAGATTCTTGTTAGGCTAG 1464 0.4255 MFAPVADTGHESSGASGPILIPKRFVWPYGGRRVFLSGSFTRWSEHIPMSPMEGCPTVFQVTCSLMPGYHQYKFNVDGDWRHDEQQPFVSGSYGVVNTIFITREPDILPSIFIPETPGRSHMEVDSDVFGHTFAYCQDSNFRMSESDLEVSRHRISVFLSTHTAYELLPESGKVIALDINLPVKQAFHILYEQGVPMAPLWDFHKSQFVGVLSAMDFILILKELGNHGSNLTEEQLETHTIAAWKEGKFRQCRTMDNARSYPQHFVHAGPHECLKDVALKILQNKVAAVPIIHSTSQDGSFPQLLHLASLSEILKCICRHFKHSSGSLPILHLPIGSIPLGTWVPKVGESNRQPLAMLRPNASLGAALSLLIQANVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQITLDEISIHQALLLGQDANSPYGFYNGQRCHMCLRSDSLHKVMERLANPGVRRVVIVEPGSKRVEGIISLSDVLRFLLG 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g3884 487 Pfam CBS domain 353 398 IPR000644 -
Sto13g3884 487 Pfam CBS domain 439 486 IPR000644 -
Sto13g3884 487 SMART cbs_1 173 222 IPR000644 -
Sto13g3884 487 SMART cbs_1 354 402 IPR000644 -
Sto13g3884 487 SMART cbs_1 437 486 IPR000644 -
Sto13g3884 487 PANTHER CBS DOMAIN, IMMUNOGLOBULIN E-SET-RELATED 13 487 - -
Sto13g3884 487 ProSiteProfiles CBS domain profile. 433 487 IPR000644 -
Sto13g3884 487 ProSiteProfiles CBS domain profile. 167 229 IPR000644 -
Sto13g3884 487 CDD E_set_AMPKbeta_like_N 24 100 - -
Sto13g3884 487 SUPERFAMILY CBS-domain pair 153 323 IPR046342 -
Sto13g3884 487 PANTHER AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT 13 487 - -
Sto13g3884 487 Pfam Glycogen recognition site of AMP-activated protein kinase 21 103 IPR032640 -
Sto13g3884 487 ProSiteProfiles CBS domain profile. 350 409 IPR000644 -
Sto13g3884 487 Gene3D - 144 326 IPR046342 -
Sto13g3884 487 SUPERFAMILY E set domains 21 101 IPR014756 -
Sto13g3884 487 Gene3D Immunoglobulins 21 108 IPR013783 -
Sto13g3884 487 SUPERFAMILY CBS-domain pair 347 486 IPR046342 -
Sto13g3884 487 Gene3D - 333 487 IPR046342 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g3884 Sto-Chr13 40065129 40071051 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g3884 25 114 Protein tyrosine phosphatase (PTP) family AT3G01510 33.333 8.29e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g3884 - - gmx:100778117 794.267
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto13g3884 13 40065129 40071051 Sto13g3884 13 40065129 40071051 CCT
Sto13g3884 13 40065129 40071051 Sto13g3884 13 40065129 40071051 ECH