Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g3880 ATGTCAAACATCACAAGCTGTGATAGTGGGAGTTTCTCGACTAGTAGAGAATTAGATGCAGTTGTTGTTAAACAGCAGACAGGTGCTCATCATGAGTTCCATAGTCCTAATTCTCTTACTTCAACTACAACTACTAGCAACGTTTCCGACACTAATTCACATCTCCCACCTCTTAAGAAGAAACGAAGCCTTCCAGGAAATCcagATCCAAATGCTGAAGTGATAGCTCTATCACCGAACACGTTGATGGCGAGAAACCGATTCGTATGTGAAATATGCAACAAAGGATTCCAAAGGGATCAGAACCTGCAATTGCACCGGCGAGGCCATAATCTGCCATGGAAGCTGAAACAAAGAAGCAGCACAGAAGTTCGAAAGAGGGTTTATGTGTGTCCAGAAGCTTCATGTGTCCACCATAACCCAGCTCGAGCATTGGGAGACCTTACTGGAATCAAAAAACACTTCTCCAGAAAACATGGCGAGAAGAAATGGAAATGTGACAAGTGCTCTAAGCGATACGCCGTTCAGTCTGACTGGAAAGCCCATTCTAAGATCTGCGGCACTAGGGAATACAAATGTGACTGTGGCACCATCTTCTCCAGAAGAGATAGCTTCATCACCCATAGAGCTTTCTGTGACGCGCTGGCAGAGGAGAATAACAAAGGCAAGATCAATGATGGGTCAAATTCAAACATAATATTACAAGGCCAACAaatctcaaataataataatagtctaGCTTGTTCATTACCAATGAAGAGCAATAATAATGTGATGAATCCACACATATCATCAGGAGTAGTCCCAGAGGATGAGGTGGGTGGTGGTGCAAAAGTAGGATTTAACTATATGAGAATGAGGGGTGCACCTGCAGGAAGCGTATTCACAAATGAGCAGGCAGCCACAGCCCAGATGTCAGCGACGGCATTGTTGCAAAAAGCGGCTCAAATGGGAGCCACTATGAGTAACGCTGAGAGCAGCGCTATGGCACCACCATCATTTGGACATCCCTACATCAACACTAGTGATATTTCCTCCTCTCACTCTCATCATCAGTATTTGAGTAGTGGGATGATGGGGTTGGggagtaatataattaataacagCAGCGTTGGAATTGGAATCAATAGTGTGGACATGTTCAATGTTATATTGGATCAAAGCAAGGCCTTATCCAAGATGATAGAGCACAATAATACTCATACTAATACTGGTGGAGGAGTATTATTGCCAATGCCAACTAGTAAAGGAAGCGCCGGGGATGTCATGACTCTCGACTTTTTGGGGATTGGAGGAGGTGGTGGCGCCGCCGCTGCACATCATGATGCTTTTCTATGGCGCCAAACAGGCtga 1353 0.4353 MSNITSCDSGSFSTSRELDAVVVKQQTGAHHEFHSPNSLTSTTTTSNVSDTNSHLPPLKKKRSLPGNPDPNAEVIALSPNTLMARNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRSSTEVRKRVYVCPEASCVHHNPARALGDLTGIKKHFSRKHGEKKWKCDKCSKRYAVQSDWKAHSKICGTREYKCDCGTIFSRRDSFITHRAFCDALAEENNKGKINDGSNSNIILQGQQISNNNNSLACSLPMKSNNNVMNPHISSGVVPEDEVGGGAKVGFNYMRMRGAPAGSVFTNEQAATAQMSATALLQKAAQMGATMSNAESSAMAPPSFGHPYINTSDISSSHSHHQYLSSGMMGLGSNIINNSSVGIGINSVDMFNVILDQSKALSKMIEHNNTHTNTGGGVLLPMPTSKGSAGDVMTLDFLGIGGGGGAAAAHHDAFLWRQTG 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g3880 450 PANTHER PROTEIN INDETERMINATE-DOMAIN 2-LIKE 8 434 - -
Sto13g3880 450 MobiDBLite consensus disorder prediction 27 72 - -
Sto13g3880 450 ProSiteProfiles Zinc finger C2H2 type domain profile. 88 110 IPR013087 -
Sto13g3880 450 Gene3D Classic Zinc Finger 68 137 - -
Sto13g3880 450 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 8 434 - -
Sto13g3880 450 SMART c2h2final6 164 184 IPR013087 -
Sto13g3880 450 SMART c2h2final6 129 159 IPR013087 -
Sto13g3880 450 SMART c2h2final6 88 110 IPR013087 -
Sto13g3880 450 Pfam Zinc finger, C2H2 type 88 110 IPR013087 -
Sto13g3880 450 Gene3D Classic Zinc Finger 142 222 - -
Sto13g3880 450 SUPERFAMILY beta-beta-alpha zinc fingers 87 184 IPR036236 -
Sto13g3880 450 MobiDBLite consensus disorder prediction 30 54 - -
Sto13g3880 450 ProSitePatterns Zinc finger C2H2 type domain signature. 90 110 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g3880 Sto-Chr13 40044081 40046814 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g3880 59 221 IDZ Gene Family AT3G50700 86.503 4.34e-110 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Sto13g3880 zf-C2H2 0.0044 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g3880 - - gmx:100813556 477.633
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto8g0645 8 3968449 3971627 Sto13g3880 13 40044081 40046814 CCT
Sto13g3880 13 40044081 40046814 Sto13g3880 13 40044081 40046814 CCT
Sto13g3880 13 40044081 40046814 Sto8g0191 8 1307195 1309919 ECH
Sto13g3880 13 40044081 40046814 Sto13g3880 13 40044081 40046814 ECH