Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g3878 ATGGAACAAGGACGATCCAGCTCAGTGAATGCTGAGGATAATGTGGGGATCCCAGATGATTTGCGCTGCAAGAGGTCAGATGGGAAACAGTGGAGATGCACCGCCATGTCCATGCCAGATAAAACAGTATGTGAGAAGCATTATATCCAGGCAAAGAAGAGGGCAGCTAATTCTGCAATGAGAGCTAGTCTCAAGAAGGCTAAGAGAAAGTCATTGGGTGAGAGTGACGTTTATCTAGAGAGCAAGAGTGAGGATTTTGACACGCCTCTCTCAAGCATGAAAGTTGGAGAACAGCATTCAGTCTCGGGAAAGAAGTTAATGGATAAGGCATCAAAAAATCAGTTTCGATACACACCGGAGACACCAACTACAAGGACCACCTCTACGCGTAATGGTCCAAAACCAAATGATGATTCACCAGATGACATGCCACAGTTTGAAGAAAATTGGATGTCTTATGAGTCACCTGCTTCTGGAATGGACTCCTCTAGGAAAAGATCTCAAAGAAGTATAGATGCCAATGCTACAACAGAATACTCTGATGGAAGTACAGATTCCTCTGATGACACTGGTGGGCAAACTTGCCATCAATGCCGAAGGAATGACAGAGACAGAGTTATTTGGTGCCTGAAATGTGATAGGAGAGGATACTGTGATAGCTGTATAGTAACATGGTACTCAGACATGTCATTGGATGAAATTCAGAGGACTTGTCCTGCCTGCCGTGGCACCTGTAATTGCAAAGTTTGCTTACGCAATGATAATTCAATAAAGGTTCGGATACGCGAGATACCTGTTCTAGACAAGTTACAGTATCTCCACTTGCTGCTGTCATCAGTACTTCCTGTGGTAAAGCAGATCCATCACGAGCAGTGTTTTGAAGTTGAACTCGAAAAGAAGTTGCGTGGGATTGAAATAGATCTTCCCCGGACAAAATTGAATGCAGATGAGCAAATGTGCTGCAATTTCTGTAGGATACCCATTACTGATTATCACCGACACTGTCCAAATTGTACATATGATTTATGCCTTAATTGCTGTCGAGATCTTCGAGAAGCAAATGTAAATCAAGATGAAGAAACCCCATCAGATGAATCAAAGATTTCTGATCGAAATGTATTAATTAAGTTTCCTGACTGGAGATCCAACAGCGATGGCAGTATTCCATGCCCCCCAAAGAATTATGGTGGTTGTGGTTATTCATCATTGAATTTAAGCCGTATCTTCAAGATGAATTGGGTTGCAAAGTTGGTGAAGAATGTGGAGGAGATGGTTAGTGGCTGCAGGAGTAGTGActttggaggtctcccagaaatCAGGTTGAATGATCCCAAACTTTGCGAATATTCTCACAGAGAGACCAGCTCTGATAATTATCTGTACTGTCCAGCATCTGAAGATCTCAAAACTGATGGGATTGTCAATTTTAGAAAGCACTGGAAAAATGGTGAACCCATTATTGTTAAGCAAGTATTTGATAGGTCATCAAGCTGGGATCCAATGGTCATATGGAGAGGGGTTCGAGAGACAGCAGATGAGAAGATGAAAGTTGAGAACAGAATGGTTACAGCCGTAGATTGCTTAACCTGGTTAGAGATAGAAATTGAACTTAGTCAGTTCATGAAAGGATACTTTGAGGGGCGTGCCCATGAAAATGGTTGGCCACAATTATTGAAGCTCAAGGATTGGCCTTCACCTAGTGCATCTGAAGAGTTTTTATTGCATCAAAGACCTGAATTTATCAGCAAACTCCCGTTGCTTGAGTATATTCACTCCAAGTGGGGCCTTCTAAATGTTGCAGCTAAATTGCCTCATTATTCTTTGCAGAATGATGTAGGACCcaagatatatatatcttatggGGTGAATGAGGAACTTGGTAGTGGTGACTCGGTGACCAATCTCCACTTTAATATGCGTGACATGGTGTACCTTTTGGTCCATACATGTGAAGTGAAGCTGAACAGATGGCAGAGAACTAAAACAGGAAAGATACAAGAAGCATCTGAGTCAAAAGAATCACCTGGGGATCCACAAATACATTCAAGGGGGAGTTCACCTGATTCATCACATGGTACAGAAGGAAATGAACAGGATCTGAATTCAAACAAGAAGGATCAAGGGTTTGAAATTCATTCAAGTGCAGAAAGGGATGTGGTCAATTCTGAAATTCCAATCAGGCAAGATGGAGATAACTCGGAGAATACAGGTCCCGGAGTTCTTTGGGATGTCTTTCGTCGGCAGGATGTTCCAAGGCTGACCGAATTTCTGAAAATGCACTGGAAAGAATTTGGGAAGCCGGATGATATAGTAGATAAAGTTGTTACAAGGCCTCTTTACGATGGAGTTATTTTTCTTGACAGACACCATAAAAGAAAGTTGAAGGAAGAATTTGGAGTGGAGCCTTGGTCATTTGAACAGAATGTTGGGGAAGCTATATTTGTTCCTGCAGGGTGTCCTTTCCAAGCAAGGAATGTTCAGTCAACTGTTCAGTTGGGCCTTGATTTCCTATCACCAGAAAGCCTGGGGGTGGCTGTAAGAATGGCGGAGGAAGTTCGCTGTCTGCCAAATGAACATGAAGCGAAGCTTCAAGTATTGGAGGTCGGGAAGATATCTCTTTATGCAGCAAGTTCAGCCATCAAAGAAGTTCAGAAACTTGTGCTTGACCCAAAACTTGGCGCGGAGATTGGATTTGGAGACCCCAATCTGACAGCAATGGTTTCTGAGAACTACGAGAAGATGGTTAAGCGAAGGCAGATTACTTGTGCCTAA 2772 0.4214 MEQGRSSSVNAEDNVGIPDDLRCKRSDGKQWRCTAMSMPDKTVCEKHYIQAKKRAANSAMRASLKKAKRKSLGESDVYLESKSEDFDTPLSSMKVGEQHSVSGKKLMDKASKNQFRYTPETPTTRTTSTRNGPKPNDDSPDDMPQFEENWMSYESPASGMDSSRKRSQRSIDANATTEYSDGSTDSSDDTGGQTCHQCRRNDRDRVIWCLKCDRRGYCDSCIVTWYSDMSLDEIQRTCPACRGTCNCKVCLRNDNSIKVRIREIPVLDKLQYLHLLLSSVLPVVKQIHHEQCFEVELEKKLRGIEIDLPRTKLNADEQMCCNFCRIPITDYHRHCPNCTYDLCLNCCRDLREANVNQDEETPSDESKISDRNVLIKFPDWRSNSDGSIPCPPKNYGGCGYSSLNLSRIFKMNWVAKLVKNVEEMVSGCRSSDFGGLPEIRLNDPKLCEYSHRETSSDNYLYCPASEDLKTDGIVNFRKHWKNGEPIIVKQVFDRSSSWDPMVIWRGVRETADEKMKVENRMVTAVDCLTWLEIEIELSQFMKGYFEGRAHENGWPQLLKLKDWPSPSASEEFLLHQRPEFISKLPLLEYIHSKWGLLNVAAKLPHYSLQNDVGPKIYISYGVNEELGSGDSVTNLHFNMRDMVYLLVHTCEVKLNRWQRTKTGKIQEASESKESPGDPQIHSRGSSPDSSHGTEGNEQDLNSNKKDQGFEIHSSAERDVVNSEIPIRQDGDNSENTGPGVLWDVFRRQDVPRLTEFLKMHWKEFGKPDDIVDKVVTRPLYDGVIFLDRHHKRKLKEEFGVEPWSFEQNVGEAIFVPAGCPFQARNVQSTVQLGLDFLSPESLGVAVRMAEEVRCLPNEHEAKLQVLEVGKISLYAASSAIKEVQKLVLDPKLGAEIGFGDPNLTAMVSENYEKMVKRRQITCA 923
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g3878 923 Gene3D Cupin 450 855 - -
Sto13g3878 923 MobiDBLite consensus disorder prediction 1 20 - -
Sto13g3878 923 ProSiteProfiles JmjC domain profile. 566 853 IPR003347 -
Sto13g3878 923 SUPERFAMILY Clavaminate synthase-like 477 859 - -
Sto13g3878 923 MobiDBLite consensus disorder prediction 67 83 - -
Sto13g3878 923 Pfam JmjC domain, hydroxylase 783 832 IPR003347 -
Sto13g3878 923 MobiDBLite consensus disorder prediction 114 134 - -
Sto13g3878 923 MobiDBLite consensus disorder prediction 151 194 - -
Sto13g3878 923 PANTHER JMJC DOMAIN PROTEIN JMJ24 10 912 - -
Sto13g3878 923 MobiDBLite consensus disorder prediction 661 704 - -
Sto13g3878 923 MobiDBLite consensus disorder prediction 678 697 - -
Sto13g3878 923 SMART cupin_9 573 853 IPR003347 -
Sto13g3878 923 ProSiteProfiles Zinc finger RING-type profile. 195 242 IPR001841 -
Sto13g3878 923 ProSiteProfiles WRC domain profile. 17 61 IPR014977 -
Sto13g3878 923 Pfam Zinc-finger domain of monoamine-oxidase A repressor R1 188 256 IPR018866 -
Sto13g3878 923 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 10 912 IPR045109 GO:0032454|GO:0033169
Sto13g3878 923 MobiDBLite consensus disorder prediction 661 677 - -
Sto13g3878 923 Pfam WRC 18 58 IPR014977 -
Sto13g3878 923 MobiDBLite consensus disorder prediction 53 197 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g3878 Sto-Chr13 40036535 40042031 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g3878 18 58 GRF Transcription Factor Family AT3G13960 46.341 3.10e-06 48.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Sto13g3878 JmjC 7.3e-06 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g3878 K15601 - gmx:100801287 1405.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto13g3878 13 40036535 40042031 Sto13g3878 13 40036535 40042031 ECH