Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g3873 ATGGATGGGAAGGAAATATCTTCTGATCAAGTTATTGCAGAAATGCTTGAAATGGGGTTTGAACATGCCAATGTTGTGGAAGCTTTAAAAGCAGTGGGTCCATCTATTAATAGTGCTGTGGAGTTTATATTGACTAGTGCTCGTAGAAGTGGCCTTAGAGCATCTATCACTAGTACTAATAATTCCAGATCTCACATGGGCAACGGAATGAGTCTCAGAAAAAGAGACTTGACCTCAACACATTCTTCAAGTAATGTTCGCCAGTCTAGCATGCTGGACCATTTTCAGTCCACTAATAAATCTACAGAGTGCAAGACAGATATTGTAGATGGTGCCCCCTTTAATAAGTTGGAGGTTCTTCCAGGCAGTATGAGTAAGCACAAGGAGCCTTTCTCTGACATTGATGTTGATTCCAATATGCACTCAGGATCCTATATTGTTGATTCTCTACAAGAATTGGATTGGGAGCAGAAAGCTAGCAAGCTCTTGCAAAAGCATTTTGGCTTTTCATCCTTGAAGAGTTTTCAAAAGGAAGCCCTGACTGCATGGGTAACTCATAGAGACTGTATTGTCCTGGCTGCCACAGGATCAGGAAAATCTCTGTGCTTTCAGATTCCTGCATTGTTAACTGGGAAGGTGGTCGTTGTGATTTCACCCTTAATAAGCCTGATGCATGATCAATGCTTAAAGCTAGCCAGGCATGGGATCAGTGCTTGTTTTCTTGGGTCTGGGCAACCTGACAATACGGTTGAACAAAAAGCAATGAGAGGCATGTATAGTATAATATATGTTTGCCCAGAGACACTTCTAAGATTGATTAAACCACTGCAGAAGCTTGCGAAGAGCCGTGGTATAGCTTTATTTGCAATCGATGAAGTGCATTGTGTTTCTAAATGGGGCCATGATTTCCGGCCAGACTACAGACGACTGTCTGCATTGCGGGAAAATTTCAGTACTAGCAAGCTAGAATTCCTGAAATTTGATATACCTCTAATGGCTTTGACAGCTACAGCAACAAACCTTGTCCGAGAGGACATTTTAAAGTCACTATGCATGTCAAAAGAAACAAAGATAGTGCTTACTTCCTTTTTCCGACCTAATTTACGTTTCTTTGTAAAGCATAGTAGCACATCACGGTCTTCATATGGGAAAGATTTTCAagaattaatcaaaatatatggTAGAAAGCAAAAGacagataaaaagaaaaataccttTATATCAGAAGAATCACAAGAGGTTTTCAATAGCTCTGATGCTAGTAGCATCTCTGACACGGACAGTGTTTCTCCGTATGATTTGGATGATGAACAAGATGATTACGTTGAAGGAGATCTTAACGTACTGCACTTAAAAAGCACAGATGGTTCTATTAAGGGAAAAGAATTGTCAGTTGAGTACCTGGAAAATGACATTGATGTCTTTCAAAGTGTGGATGACTGGGATGTTGCCTGTGGTGAATTCTGTGGACAACCTCCTCAAAAGGATTGGGAATTATCTGAGATTGTTGATCCGCCCAAGAAACCAGAAGAAAGACTTAAACTTCTTAAAGAGCCTTTAGAGCAAGGACCAACTATCATATATGTACCCACTAGAAAGGGAACACTAAGCATTGCAAAGTATTTGTGCGAGTTCGGTGTGAAGGCTGCTGCTTATAATGCATCGCTGCCCAAATCACATTTAAGAAGGGTACACAAAGAGTTTCATGAAAACACATTAGAGGTTGTTGTTGCAACTGTGGCTTTTGGAATGGGGATTGACAAATTGAATGTCAGAAGGATCATCCACTATGGTTGGCCACAGAGTTTAGAAGCCTATTACCAAGAAGCTGGTCGGGCTGGACGAGATGGAAAATTAGCAGATTGCATTCTCTATGCAAAACTATCAAGAGTGCCATCACTTTTGCCAAGTCGTAGAAGTGACGAACAGTTAAAACAAGCCTATATCATGTTGTCTGACTGCTTCAGATATGGAATGAATACTTCATATTGTAGAGCAAAGACTCTGGTGGAGTACTTTGGAGAGGATTTCTGCAACCAGAAGTGTCTCATATGTGATGTGTGTGTTGATGGACCGCCTCAAATGCAGAATCTGAAAGAGGAGGCACTTACTTTACTACAAGCTGTGGCTGCACATTACGGAAGAAGCTCTGATATGGATTGCTTATATGATGATATACATTTTGACACAGAAGAAAGAAGACTTAGAGAGAAGCCGAGTCTTAAGATGGTTGTTAGGAAAATAAGGGAGCAGTCTCAAAAATTTTTTACCACTGATATGTTATGGTGGAGAGGTCTTGCTCGAGTTATGGAACTTAAAGGATACATTAGGGAGGGAGATGATAAGAACCATGTTCAGATAAAGTACTTGGGGCCAACAGAACTGGGATTAAAGTTCCTAAATTCCAGTTGTGAGCAAGCTTTATATGTTTACCCTGAGGCAGATATGCTGCTTGCAGAGAAAACTAGGAAACCGTATTCCTCATTCTCGGACTGGGGAAAAGGCTGGGCAGATCCTGAGATTCGTCGCCAGCGGCTGGAAAGAATGCAACACGATAGGAAGCCACGGATGGTGAAGAGTCCTAGAAAGTCACGGAAGAGAAAAGCTAATAAAGTTAAACCTGATCTCAAGACTTGTCGAGGGAGACTGGCTGCAAAACTCTCAAAACACAAGTGA 2676 0.4073 MDGKEISSDQVIAEMLEMGFEHANVVEALKAVGPSINSAVEFILTSARRSGLRASITSTNNSRSHMGNGMSLRKRDLTSTHSSSNVRQSSMLDHFQSTNKSTECKTDIVDGAPFNKLEVLPGSMSKHKEPFSDIDVDSNMHSGSYIVDSLQELDWEQKASKLLQKHFGFSSLKSFQKEALTAWVTHRDCIVLAATGSGKSLCFQIPALLTGKVVVVISPLISLMHDQCLKLARHGISACFLGSGQPDNTVEQKAMRGMYSIIYVCPETLLRLIKPLQKLAKSRGIALFAIDEVHCVSKWGHDFRPDYRRLSALRENFSTSKLEFLKFDIPLMALTATATNLVREDILKSLCMSKETKIVLTSFFRPNLRFFVKHSSTSRSSYGKDFQELIKIYGRKQKTDKKKNTFISEESQEVFNSSDASSISDTDSVSPYDLDDEQDDYVEGDLNVLHLKSTDGSIKGKELSVEYLENDIDVFQSVDDWDVACGEFCGQPPQKDWELSEIVDPPKKPEERLKLLKEPLEQGPTIIYVPTRKGTLSIAKYLCEFGVKAAAYNASLPKSHLRRVHKEFHENTLEVVVATVAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGKLADCILYAKLSRVPSLLPSRRSDEQLKQAYIMLSDCFRYGMNTSYCRAKTLVEYFGEDFCNQKCLICDVCVDGPPQMQNLKEEALTLLQAVAAHYGRSSDMDCLYDDIHFDTEERRLREKPSLKMVVRKIREQSQKFFTTDMLWWRGLARVMELKGYIREGDDKNHVQIKYLGPTELGLKFLNSSCEQALYVYPEADMLLAEKTRKPYSSFSDWGKGWADPEIRRQRLERMQHDRKPRMVKSPRKSRKRKANKVKPDLKTCRGRLAAKLSKHK 891
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g3873 891 SMART ultradead3 168 373 IPR014001 -
Sto13g3873 891 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 5 46 IPR015940 -
Sto13g3873 891 SUPERFAMILY UBA-like 8 47 IPR009060 GO:0005515
Sto13g3873 891 MobiDBLite consensus disorder prediction 855 873 - -
Sto13g3873 891 Pfam RecQ zinc-binding 639 688 IPR032284 -
Sto13g3873 891 Gene3D - 1 50 - -
Sto13g3873 891 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 180 356 IPR014001 -
Sto13g3873 891 CDD DEXHc_RecQ 161 363 - -
Sto13g3873 891 CDD UBA 12 41 - -
Sto13g3873 891 Gene3D - 133 364 IPR027417 -
Sto13g3873 891 PANTHER ATP-DEPENDENT DNA HELICASE Q-LIKE SIM 2 879 - -
Sto13g3873 891 SMART helicmild6 536 617 IPR001650 -
Sto13g3873 891 MobiDBLite consensus disorder prediction 846 891 - -
Sto13g3873 891 Pfam DEAD/DEAH box helicase 175 339 IPR011545 GO:0003676|GO:0005524
Sto13g3873 891 Gene3D - 499 626 IPR027417 -
Sto13g3873 891 SMART uba_6 8 45 IPR015940 -
Sto13g3873 891 Pfam Helicase conserved C-terminal domain 508 616 IPR001650 -
Sto13g3873 891 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 508 655 IPR001650 -
Sto13g3873 891 MobiDBLite consensus disorder prediction 417 436 - -
Sto13g3873 891 PANTHER DNA HELICASE RECQ FAMILY MEMBER 2 879 - -
Sto13g3873 891 Gene3D - 629 811 IPR036388 -
Sto13g3873 891 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 211 627 IPR027417 -
Sto13g3873 891 TIGRFAM recQ_fam: ATP-dependent DNA helicase, RecQ family 162 391 IPR004589 GO:0004386|GO:0006310
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g3873 Sto-Chr13 40001890 40007545 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g3873 512 617 Eukaryotic Initiation Factors Gene Family AT5G11170 28.302 1.49e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g3873 K10900 - gmx:100793222 1184.86
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto13g3873 13 40001890 40007545 Sto13g3873 13 40001890 40007545 ECH