Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g3860 ATGAGTCGCAGGTCAAGTCGCACTATTTATGTTGGCAATCTTCCTGGTGATATTCGGTTGAGGGAAGTAGAGGATCTCTTCTACAagTATGGTCCAATTATTGACATTGATTTGAAAATCCCTCCTAGACCACCGGGTTATGCTTTTGTGGAGTTTGAGGATCCTCGTGATGCTGAAGATGCTATTCGCTATCGAGATGGCTATAATTTTGATGGTTTTCGATTACGAGTGGAACTTGCACATGGTGGGCGAGGATATTCATCATCAGTAGATCGTTACAGTAGTTATAGTGGTGGTAGTAGCCGTGGAGTTTCCAAGCGTTCTGACTATCGTGTCCTGGTCACTGGATTACCCCCCTCAGCTTCATGGCAAGACTTGAAGGATCACATGCGTAAAGCTGGTGATGTATGTTACTCTCAAGTCTTCCGTGAGAGTGGTGGCATGACTGGGGTAGTGGATTATACTAACTACGATGATATGAAATATGCTATCAGGAAACTTGATGACTCGGAATTCCGGAATGCATTTTCTCGGGCATACATACGGGTGAGGGAATATGATCGGAGGAGTTATTCTAGGAGTCCCAGTCGTGATTCAAGGAGGAGTTATTCTAGAAGTTACAGTCCTTACATCTCGCGAAGCCGAAGCCGAAGCCGAAGCCGCAGCTGGAGTCGGAGTCGAAGACGAAGTCGGAGCCTTAGCTATAGTGGCAGCTTATCTCCGAAGGTAAAACGTTCACGACGTTCAGTGTCTCTCTCAAGGAATCATGCACTGCGCGGAATAGATTGTTTAGCAAATTTtgagactaaaatgaaatactGGGCTCAATTGCTTTACCACTTGGCTGCTGCATCTCCCTCAAGATCCAGATCTCCATACTCATCTCCCCCACCTTACAGAAGACGCAGTCCTAGCCGTAGTCCCCGGAGCTTGTTGGGATCTCGTTCACCTTCGGTGAGGTCTGAACGCAGCAGATCTGTGGACTCTGGGTATCGCTATTGA 1002 0.4631 MSRRSSRTIYVGNLPGDIRLREVEDLFYKYGPIIDIDLKIPPRPPGYAFVEFEDPRDAEDAIRYRDGYNFDGFRLRVELAHGGRGYSSSVDRYSSYSGGSSRGVSKRSDYRVLVTGLPPSASWQDLKDHMRKAGDVCYSQVFRESGGMTGVVDYTNYDDMKYAIRKLDDSEFRNAFSRAYIRVREYDRRSYSRSPSRDSRRSYSRSYSPYISRSRSRSRSRSWSRSRRRSRSLSYSGSLSPKVKRSRRSVSLSRNHALRGIDCLANFETKMKYWAQLLYHLAAASPSRSRSPYSSPPPYRRRSPSRSPRSLLGSRSPSVRSERSRSVDSGYRY 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g3860 333 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 76 IPR000504 GO:0003723
Sto13g3860 333 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 112 174 IPR000504 GO:0003723
Sto13g3860 333 Gene3D - 110 187 IPR012677 -
Sto13g3860 333 MobiDBLite consensus disorder prediction 285 333 - -
Sto13g3860 333 PANTHER PRE-MRNA-SPLICING FACTOR SF2-LIKE PROTEIN 3 255 - -
Sto13g3860 333 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 3 255 - -
Sto13g3860 333 CDD RRM1_SF2_plant_like 8 79 - -
Sto13g3860 333 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 110 188 IPR000504 GO:0003723
Sto13g3860 333 SMART rrm1_1 111 180 IPR000504 GO:0003723
Sto13g3860 333 SMART rrm1_1 8 78 IPR000504 GO:0003723
Sto13g3860 333 MobiDBLite consensus disorder prediction 190 213 - -
Sto13g3860 333 SUPERFAMILY RNA-binding domain, RBD 5 178 IPR035979 GO:0003676
Sto13g3860 333 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 82 IPR000504 GO:0003723
Sto13g3860 333 CDD RRM2_SF2_plant_like 110 185 - -
Sto13g3860 333 Gene3D - 2 109 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g3860 Sto-Chr13 39921350 39924980 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g3860 3 80 Eukaryotic Initiation Factors Gene Family AT3G11400 32.099 7.15e-06 45.4