Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g3853 ATGTCCGGGGCAGATAGTGAGAACAGTACGAGGAGAGTGGCTATTATCGTGGTGTCAGCGTTCCTATTGGTGAGTTTGGTAGTGGCGGTGACGGTGGGCGTGACATGGCAGCAGATAGAATCTGAGGAGAACCAAGAGGGCGACAAATCGGTGTCTAACAAACAAAAAGCCGTGAAAAGCATATGCGCCCCCACCGATTACAAGAAAGAATGCGAGGAGACGCTGGAGGCTGAGGGTGGCGACACCTCTGATCCAAAACAACTCATCATGGTAACCTTCAATGCCACCATCAAGAAAATCGAGTCAGCCTTAGAGAAATCCCATACACTCCACGAAGCGGAGAATGATCCACGGGCCAAACAAGCCTTGGACTCATGCAAGGACCTCATGCAACTCTCCATCGACGAGTTCACGAGATCCCTCTATAGCATCAATTCCTTCGATTTCAACAATATAGACAAGATCCTCATGAACCTCAAGGTTTGGCTCAGTGGAGCCATCACCTACCAGGACACGTGCATCCAAGGCTTTGAAAACACCACCAGCCCCGCCGGTCAGAAGATGAAGGAACTTTTAGAAAACGCCATGCACATGAGTAGCAACGGCCTCGCCATTATCAATGACATGGCCAACGCTCTCGCCAGCTTGAACCTTACCAAACAGAGCCGCCGTCTCCTCCACCACGAGGACGACCTCACCCACGCAGGGGATGCAACCGTCCTCCGCCACGGCGTCCATCACAATTTGCAGCTGCCGTTTTGGATGGAGGAGGACGGGATGGGTGCTCGGAGGGGACTCCTGGAGGGAGATAAGCACATAAAGGAAGGGAAGCTGAAGCCGGACGTGGTGGTGGCCAAAGACGGAAGCGGGAAATTCAAGAGCATCAACGAGGCGTTGAATCAGGTGccgaagaagaacaagaagccGTTCGTGATATACATAAAGGAAGGGGTGTATAAGGAGTACGTGCACATCAAGAAGGACATGACGTACGTGGTGTTGATTGGAGATGGCGGAAACAAGACACGCATCACAGGGAACAAGAACTTCAAGGACGGCACAAACACCTACAACACGTGCACAGTGGCAGTGCAAGGGGACCACTTCTTGGCCATCAAGATGGGCTTCGAAAACTCGGCTGGAGCGGAGAAGCATCAGGCCGTGGCCTTGAGGGTGCAGGCAGACTTGTCTATTTTCTACAAATGCCAAATAGATGGGTATCAAGACACGCTCTACGCCCACGCATTGCGTCAGTTCTACAGAGACTGCACCATCTCAGGGACCATCGACTTCATATTCGGGGATGCCGTGTCCGTGTTCCAGAACTGTACGTTTGTGGTGAGAAAGCCAATGGAGAACCAGCAATGCATAGTGACGGCACAAGGGAGGAAAGAGAGACACCAGCCGTCGGCGATAGTCATCCAAGGGGGCTCCATAGTGGCGGACAAGAAGTACTACCCGGTGAGGTTCAAGAACAAGGCGTATTTGGCCAGACCATGGAAGCTTTACTCCAGGACCATCATCATGGAGGCGTACTTGGATGATTTGATTCAGCCGGAAGGGTTCCTAGGGTGGGACACTTTGGGGACCGGGGAGAAGACATGCTTCTACGCCGAGTACAACAATAAAGGACCAGGTTCTGATGTGTCCAAGCGCGTCAAGTGGAATGGGATCAAGCACATCACGCCACAACATGCCACCGATTTCTCACCCTTGAGGTACTTTAAGAATGATCTGTGGATTAGGGAAACCAGAATTCCTTACAATCCAGGCATGTTGTCCACCAAGTAA 1791 0.5131 MSGADSENSTRRVAIIVVSAFLLVSLVVAVTVGVTWQQIESEENQEGDKSVSNKQKAVKSICAPTDYKKECEETLEAEGGDTSDPKQLIMVTFNATIKKIESALEKSHTLHEAENDPRAKQALDSCKDLMQLSIDEFTRSLYSINSFDFNNIDKILMNLKVWLSGAITYQDTCIQGFENTTSPAGQKMKELLENAMHMSSNGLAIINDMANALASLNLTKQSRRLLHHEDDLTHAGDATVLRHGVHHNLQLPFWMEEDGMGARRGLLEGDKHIKEGKLKPDVVVAKDGSGKFKSINEALNQVPKKNKKPFVIYIKEGVYKEYVHIKKDMTYVVLIGDGGNKTRITGNKNFKDGTNTYNTCTVAVQGDHFLAIKMGFENSAGAEKHQAVALRVQADLSIFYKCQIDGYQDTLYAHALRQFYRDCTISGTIDFIFGDAVSVFQNCTFVVRKPMENQQCIVTAQGRKERHQPSAIVIQGGSIVADKKYYPVRFKNKAYLARPWKLYSRTIIMEAYLDDLIQPEGFLGWDTLGTGEKTCFYAEYNNKGPGSDVSKRVKWNGIKHITPQHATDFSPLRYFKNDLWIRETRIPYNPGMLSTK 596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g3853 596 Gene3D Invertase/pectin methylesterase inhibitor family protein 52 210 IPR035513 -
Sto13g3853 596 ProSitePatterns Pectinesterase signature 2. 425 434 IPR033131 -
Sto13g3853 596 Gene3D - 275 592 IPR012334 -
Sto13g3853 596 CDD PMEI-like_3 60 211 - -
Sto13g3853 596 SUPERFAMILY Pectin lyase-like 279 590 IPR011050 -
Sto13g3853 596 PANTHER PECTINESTERASE 12 592 - -
Sto13g3853 596 ProSitePatterns Pectinesterase signature 1. 306 325 IPR018040 -
Sto13g3853 596 Pfam Pectinesterase 281 576 IPR000070 GO:0030599|GO:0042545
Sto13g3853 596 SMART PMEI_2 53 205 IPR006501 GO:0004857
Sto13g3853 596 Pfam Plant invertase/pectin methylesterase inhibitor 57 205 IPR006501 GO:0004857
Sto13g3853 596 PANTHER PECTINESTERASE 12 592 - -
Sto13g3853 596 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 55 209 IPR035513 -
Sto13g3853 596 TIGRFAM PME_inhib: pectinesterase inhibitor domain 39 209 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g3853 Sto-Chr13 39900676 39902466 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g3853 5 594 Carbohydrate Esterase AT3G05610 46.959 0.0 577
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g3853 K01051 - gmx:100801686 692.189
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto13g3853 13 39900676 39902466 Sto13g3853 13 39900676 39902466 CCT