Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g3852 ATGTCGTTTCTTTTAGCTTCCTTAGCCATGGCTTCCGCAGCTTCTCTGCCACAACATGGGACCCAAAGAATTTACGGCCATTCCTGTAGTAGTGCCCTAAGTATGAGGAAAGTGGAAAGGAATGGAACCAAAATAAATGCAGAAAAtgTGTATATGCTTTCGTTAAGAGACTCACTCATCATAATTAGATGCGCGATTCAGGTCGAAACTAGATTAACCGGGCTATGCTTATGCTACAGAAAAGCATTGGGATGGGAGggcgccaatgacatgttggggagactAACAAAGGCCCAACCCAAGGAATTACTGCACAAGCCTAAactttggatggcttcaggggaatTCGAACCCTCACCACCCATgaAAGCAAATGATTTAGTTAAAAAGTGGAATGCGATGTTATCTGATGGGATGTTGTATATTCTTCTTCATGTAGAGTTAGCGAATCAATCAGATTgcttaattaataGCAGGGGAGCAAATATGGATATATATAGGGAAACAGTCTCCAAAACAAAAAAGCAATTGGTGCCTCTGCTGTCTCAAGTCACTGCCTTGATTGCTCAAGCGAGAGCAAAGCCTGGAATACGAAGGAAACCTGGAAGCGTGGCTAAGTGCAGCACTAAGCAACCAAGACACGTGacaagtagtagtagtagtagtagtgtgGTGATTCCGGTCCCGGAGTGGATGACGGAGGCAGATCAAGAGCTGCTTAAGTCAAGGCCACGTGCGGACGCGGTGGTGGCATTGGATGGGAGTGGACACTACCGCTCTATTACGGAAGCGGTGAATGCAGCACCAAGCATGAGCAGGAGGAGGTACGTTATATACGTGAAGAAGGGGATTTATAAGGAGAATGTAGatatgaagaggaagaagaccaATATTATGTTTGTAGGCGATGGTATTGGGAAGACCATCATCACTGGCAACCGCAATTTCATGCAGGGATGGACCACGTTTAGAACTGCCActcttgCTGTGTCCGGGAAGGGATTCATAGCGAGGGACATGTCGTTTCGGAACACCGCTGGGCCAGAAAACCATCAAGCGGTGGCTCTGCGTGTGGATTCGGACCAATCAGCGTTCTACAGGTGTAGCATAGAAGGCCACCAAGACACACTTTACGCTCATTCACTCCGACAGTTCTATAGGGAATGCGAGATCTACGGAACCATAGACTTCATATTTGGGAACGGAGCCGCCGTGTTACAAAACTGCAAGATATACACGAGAGTGCCACTTCCCTTGCAGAAGGTGACTATCACCGCCCAAGGCCGAAAAAGCCCACATCAGAGCACTGGGTTCACCATCCAGGATAGCTTTGTGTTGGCCACTCAGCCCACCTATTTGGGCCGCCCTTGGAAGCAGTACTCAAGGACCGTCTACATAAACACCTATATGAGTGGGCTTGTCCAGCCCAGAGGATGGCTCGAGTGGTTTGGCAACTTTGCGTTGAACACTTTGTGGTACGGTGAGTATAGGAATTATGGGCCTGGTGCCGCAGTGGGGGGAAGAGTGAAATGGCCTGGCTATCACATTATTAAAGATGCTGCCGTCGCCAATTACTTCACGGTTCAGCGCTTCATAGACGGGGGAGCGTGGTTGCCGGCCACAGGTGTTAGGTTTACGGCAGGTTTGACCAATTGA 1656 0.4523 MSFLLASLAMASAASLPQHGTQRIYGHSCSSALSMRKVERNGTKINAENVYMLSLRDSLIIIRCAIQVETRLTGLCLCYRKALGWEGANDMLGRLTKAQPKELLHKPKLWMASGEFEPSPPMKANDLVKKWNAMLSDGMLYILLHVELANQSDCLINSRGANMDIYRETVSKTKKQLVPLLSQVTALIAQARAKPGIRRKPGSVAKCSTKQPRHVTSSSSSSSVVIPVPEWMTEADQELLKSRPRADAVVALDGSGHYRSITEAVNAAPSMSRRRYVIYVKKGIYKENVDMKRKKTNIMFVGDGIGKTIITGNRNFMQGWTTFRTATLAVSGKGFIARDMSFRNTAGPENHQAVALRVDSDQSAFYRCSIEGHQDTLYAHSLRQFYRECEIYGTIDFIFGNGAAVLQNCKIYTRVPLPLQKVTITAQGRKSPHQSTGFTIQDSFVLATQPTYLGRPWKQYSRTVYINTYMSGLVQPRGWLEWFGNFALNTLWYGEYRNYGPGAAVGGRVKWPGYHIIKDAAVANYFTVQRFIDGGAWLPATGVRFTAGLTN 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g3852 551 Gene3D - 242 549 IPR012334 -
Sto13g3852 551 PANTHER PECTINESTERASE 135 549 - -
Sto13g3852 551 ProSitePatterns Pectinesterase signature 1. 272 291 IPR018040 -
Sto13g3852 551 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 22-RELATED 135 549 - -
Sto13g3852 551 Pfam Pectinesterase 247 534 IPR000070 GO:0030599|GO:0042545
Sto13g3852 551 ProSitePatterns Pectinesterase signature 2. 391 400 IPR033131 -
Sto13g3852 551 SUPERFAMILY Pectin lyase-like 243 548 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g3852 Sto-Chr13 39882770 39894878 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g3852 132 551 Carbohydrate Esterase AT3G05620 64.858 0.0 559
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g3852 K01051 - gmx:100810565 639.032
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto13g3852 13 39882770 39894878 Sto13g3852 13 39882770 39894878 ECH