Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g3847 atggcGACAGAGAAAGTGTTGGCATTCTCAGTAGCATCTGTGGTGGAAGAGGTTCTTCAACAGCATGGGACACAATTGAGTGACATCAACTTGGCGTCAAGACAGGCTGAAGAAGCTTGCATGAGAAGATACGAAGCAGCAGGGTGGCTGCGGAAGAAGATAGGAGTGGTTGGAGCAAAAGACTTGCCAGCTCAGCCATCTGAACATGACTTCAAGACTGGATTGCGAAGTGGCATCATCCTTTGTAATGTTCTTAACAAACTTCAACCTGGAGCCgtGGTTGAAGGTGCCTGTGATTCTCATGTAATTCCTGATGGGGCAGCATTGTCTGCGTTTCAGTACTTTGAGAATGTAAGGAATTTTCTAGTGGCCCTGCAGGAAATGGGGCTTCCCACCTTTGAAGCTTCTGATTTGGAGAAGGGAGGGAAATGTGGGAGGATAGTGAACTGCGTATTAGCATTAAAGTCATACAGTGAATGGATTGAAGGAGGCAAACATGGGTCATGGAAGTACGCCGGGAATACAAAACCATCTTCCACTGCCAAACCATTTTTCCGGAAAAACTCTGAGCCTTTCATCCACCCTTCATCCTCAACCGCCACTCATCATTCCTTGAATTCATTAGTACGCCAATATTTATCTgacaagaagcaagaagaaaTTCCCATTATGGTGGAATCTCTGCTTACCAAAGTCATGGAGGAGTTTCAACGTCGCATGCCAATCCAACACCAACTGTTGAAAACAGCTTCACCACATAAGGTAGCCTTTGAAACTCCGAAACCTGCTTCTCAACACAAAGAGATGGAAGAACTAGAAGATGCAAAGCTTAAACAAGAAAAAAGTTATGAAGAGAAGGTCAATTACAACAACGAAGAATCAAGCAGACAGCTTTTGAAGCAGCAAACGTTGGTGGAACAACAAAACAGAGAGATCCAGGAATTGAAAAAACTCTTTCATCATACAAAAACGGGGATACACTTTTTGCACAAGAGTTATCAGGAGGATATCACCTATTTAAGTAATCACCTCCAAGGCCTAGCTtctgctgcttcaggatatcaCAAAGTTGTTGAAGAAAACCGCAACTTGTACAATCAACTGCAGGACTTGAAAGGAAATATTAGGGTATACTGCCGAGTTCGACCATTTTTGGGTGAACAATCGAAGCATTTGAGCAGTATTAGTAACATAGAAGAAGGAACTGGAAGTATCTCAATTATAACCACACCTTCGAGAAAcagaagagaagggaagaaaACGTTTAGTTTCAATAGAGTGTTTGGTCCTTGTGCAACTCAAGAGGAGGTTTTCTCTGACACCCGATCTCTTATTCGTTCGGTGCTTGATGGTTACAACGTCTGCATATTTGCTTATGGCCAGACAGGATCTGGAAAAACATTTACTATGTCTGGACCAAAGGATGTTAAGGAGGAAAGCATGGGTGTCAACTATAGGGCACTGAGAGATCTCTTCCATCTCTCAGAGCAGAGGAAGGACACTATTTGCTATGAGATCTCAGTTCAGATGCTTGAGATCTACAATGATCAAATCAGAGATTTACTAGTCACTGATGAAATTCGTAACAGCTCACAAAATGGCATTAACGTGCCAGATGCCAACCTTGCTCCTGTTTCATCAACCTCGGATGTCATATATTTGATGAACTTAGGACAAAAGAATCGAGCCGTTGGAGCTACCGCCATGAATGACCGAAGCAGTCGTTCTCATAGCTGCGTGACAGTTCATGTTGAAGGAAAGGACCTAACATCAGGAAATATTCTTCGTGGGTGTATGCATCTGGTAGACCTAGCAGGAAGTGAGAGGGTTGATAAGTCAGAGGTGACAGGGGATAGGCTTAAAGAGGCTCAGCATATAAACAAATCACTTTCTGCCTTAGGAGATGTTATTTCTTCACTATCTCAAAAGAATGCACATGTTCCCTACAGGAACAGTAAGCTTACTCAGCTGCTTCAGGATTCTCTGGGAGGACAAGCAAAGACACTTATGTTTGTTCATATTAGTCCAGAGCATGAAGCTCTCGGAGAAACTATTAGTACACTCAAATTTGCTGAACGGGTCTCCTCTGTTGAACTTGGTACTGCACGAGTTAACAAAGACAGCAGCCCAGATGTGAAAGAGCTGAAAGAGCAGATTGCTTGTCTAAAAGCAGCCTTATCAAGGAAGGAGGGAGAAGCAAAACATTTTCAACATTCTGAAATCCCAAGACCCAGGTCTCATGGGTCTTCTCCTAAACAACCTAGTTGGATGTCAGGAAGTCATAGGAAACCAAAAGATGATTCTAGTAGCCTAGAGGGCCAGAAGAAGGCAGCGTTGAAGCTGAAAAGGCGAAGCCTAGATCCCCAAGATATGTACAAGAATTCATCTGCATGGCCACTTGTTAGTGGTCAAAGAGTGAATGGGAAAGAGGAAGATAAAGTATCAGTTTGTGAGGATTGGGTTGATAAGATGATGTTGAAGAGGCAAGACAGCTTAACTAGCGATGATAATCTAGTGGAGCAATGGGAGGCAGAAAGCAAAGAGTTGTCTCAAGTGTTCAATCCTTCAAAAATATGCCTGGAGCACTCCATTAAAGTCACAGTGCACAAAAAGGATGGGCAGGTCTATGATGATGTACAGAGGAACCTGTATGAGGTGGTCACCACAGATGAGTCTGATCATGAGCTTGAGCTTGAGCTTGCAACTAGTGATTCTTCAGAATCAGACTTACATTGGTTAGTTAGTGTACCTAAACCAACCAGCATTCCCAATGGATTAGGCTCTAAACCAAAGAAATTGACTCAACCCACACCAACAAAAAACCCAGAAGCCAGGAGTATGATTCCCTCATTGATTCCTTCGCCATCAAGGAAAGAAGTTCATGCAAGTCAACCCAGAAAGCAGTCAGGTGCCATTGATGCAAAGAGAAGAACTGGGAATGCCAAGTGA 2949 0.4229 MATEKVLAFSVASVVEEVLQQHGTQLSDINLASRQAEEACMRRYEAAGWLRKKIGVVGAKDLPAQPSEHDFKTGLRSGIILCNVLNKLQPGAVVEGACDSHVIPDGAALSAFQYFENVRNFLVALQEMGLPTFEASDLEKGGKCGRIVNCVLALKSYSEWIEGGKHGSWKYAGNTKPSSTAKPFFRKNSEPFIHPSSSTATHHSLNSLVRQYLSDKKQEEIPIMVESLLTKVMEEFQRRMPIQHQLLKTASPHKVAFETPKPASQHKEMEELEDAKLKQEKSYEEKVNYNNEESSRQLLKQQTLVEQQNREIQELKKLFHHTKTGIHFLHKSYQEDITYLSNHLQGLASAASGYHKVVEENRNLYNQLQDLKGNIRVYCRVRPFLGEQSKHLSSISNIEEGTGSISIITTPSRNRREGKKTFSFNRVFGPCATQEEVFSDTRSLIRSVLDGYNVCIFAYGQTGSGKTFTMSGPKDVKEESMGVNYRALRDLFHLSEQRKDTICYEISVQMLEIYNDQIRDLLVTDEIRNSSQNGINVPDANLAPVSSTSDVIYLMNLGQKNRAVGATAMNDRSSRSHSCVTVHVEGKDLTSGNILRGCMHLVDLAGSERVDKSEVTGDRLKEAQHINKSLSALGDVISSLSQKNAHVPYRNSKLTQLLQDSLGGQAKTLMFVHISPEHEALGETISTLKFAERVSSVELGTARVNKDSSPDVKELKEQIACLKAALSRKEGEAKHFQHSEIPRPRSHGSSPKQPSWMSGSHRKPKDDSSSLEGQKKAALKLKRRSLDPQDMYKNSSAWPLVSGQRVNGKEEDKVSVCEDWVDKMMLKRQDSLTSDDNLVEQWEAESKELSQVFNPSKICLEHSIKVTVHKKDGQVYDDVQRNLYEVVTTDESDHELELELATSDSSESDLHWLVSVPKPTSIPNGLGSKPKKLTQPTPTKNPEARSMIPSLIPSPSRKEVHASQPRKQSGAIDAKRRTGNAK 982
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g3847 982 MobiDBLite consensus disorder prediction 732 795 - -
Sto13g3847 982 SMART kinesin_4 372 705 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Sto13g3847 982 Pfam Calponin homology (CH) domain 42 159 IPR001715 GO:0005515
Sto13g3847 982 PANTHER KINESIN-LIKE PROTEIN KIN-14H 6 977 - -
Sto13g3847 982 MobiDBLite consensus disorder prediction 759 789 - -
Sto13g3847 982 MobiDBLite consensus disorder prediction 927 944 - -
Sto13g3847 982 SMART ch_5 42 157 IPR001715 GO:0005515
Sto13g3847 982 Gene3D Kinesin motor domain 316 699 IPR036961 -
Sto13g3847 982 PRINTS Kinesin heavy chain signature 451 472 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Sto13g3847 982 PRINTS Kinesin heavy chain signature 567 584 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Sto13g3847 982 PRINTS Kinesin heavy chain signature 598 616 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Sto13g3847 982 PRINTS Kinesin heavy chain signature 647 668 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Sto13g3847 982 Coils Coil 712 732 - -
Sto13g3847 982 CDD KISc_C_terminal 372 699 - -
Sto13g3847 982 Coils Coil 354 374 - -
Sto13g3847 982 Coils Coil 298 318 - -
Sto13g3847 982 Coils Coil 272 292 - -
Sto13g3847 982 MobiDBLite consensus disorder prediction 916 982 - -
Sto13g3847 982 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 374 733 IPR027417 -
Sto13g3847 982 MobiDBLite consensus disorder prediction 743 757 - -
Sto13g3847 982 Gene3D - 33 161 IPR036872 -
Sto13g3847 982 Pfam Kinesin motor domain 380 697 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Sto13g3847 982 SUPERFAMILY Calponin-homology domain, CH-domain 44 169 IPR036872 -
Sto13g3847 982 ProSiteProfiles Kinesin motor domain profile. 374 697 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Sto13g3847 982 PANTHER KINESIN-LIKE PROTEIN KLP-3 6 977 - -
Sto13g3847 982 ProSiteProfiles Calponin homology (CH) domain profile. 40 159 IPR001715 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g3847 Sto-Chr13 39844413 39848989 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g3847 362 697 Calmodulin-binding Proteins AT5G65930 42.609 7.14e-78 276
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g3847 K10406 - gmx:100799535 1238.79
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto13g3847 13 39844413 39848989 Sto8g0236 8 1584641 1589389 ECH
Sto13g3847 13 39844413 39848989 Sto13g3847 13 39844413 39848989 ECH