Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g3844 ATGTCGTATCGCCCTACCGGTAACTCCAGGACCGAGGTCCGTCGCAATCGATATAAGGTGGCCGTGGATGCTGAAGAAGGTCGTAGACGGCGAGAGGATACCATGGTCGAGATCCGAAAGAACCGTAGAGAAGAGAGTTTGCAGAAGAAGAGGCGTGAGGGCCTCCAAGCTCAGCAGATGCCTGCTGCAATCCACTCTACTGCCGTAGAGAAGAAGGTCAATTTCGGTGATCTCTGTTTTTATGATTTGGTTTATGTTCTGGAAAGACAAACTGATAGGAATTGCTTGGATATGAACTTCCAATTGGAACATCTACCATCCATGGTTGCTGGTGTTTGGTCAGATGATAGTAACTTGCAGCTTGAGTCAACAACTCAGTTTCGAAAGTTGCTTTCAATTGAGCGTAGCCCACCAATTGAGGAGGTCATACAAGCTGGTGTAGTGCCTCGCTTTGTTGAATTTTTGATGAGGGAAGACTTTCCTCAACTGCAGTTTGAGGCAGCTTGGGCTCTGACAAATATAGCTTCTGGCACATCTGAAAACACTAAGGTGGTAATTGATCACGGAGCTGTTCCAATCTTTGTCAAACTCCTTGGTTCTCCAAGTGACGATGTCCGCGAACAGGCCGTGTGGGCATTAGGAAATGTTGCTGGGGATTCTCCCCGATGCCGTGATCTTGTTCTCGGTAATGGGGCCTTACAACCTCTTTTGACACAGTTGAATGAGCAAGCTAAGCTGTCTATGCTCAGAAATGCTACCTGGACACTTTCAAACTTCTGCAGGGGCAAGCCACAACCTCCTTTTGATCAGGTTAGACCTGCACTTCCTGCTCTTACCCATCTTATCCATTCAAATGATGAAGAAGTCTTGACTGATGCCTGTTGGGCTCTTTCATATCTTTCTGATGGTACTAATGACAAAATTCAAGCTGTAATTGAAGCTGGTGTTTGCAGTCGGCTTGTTGAGCTTCTAATGCACCCATCCCCATCTGTGCTTATTCCTGCTCTTCGTACAGTTGGAAATATTGTCACTGGAGATGATATGCAAACTCAGGTTATCATCAACCATCAAGCTCTTCCTTGCCTTCTGAATCTATTgactaataattttaaaaaaagcataAAGAAGGAAGCTTGTTGGACCATATCAAATATCACAGCTGGGAATAAACAGCAGATTCAGGGTGTAATTGAGGCTAATATAATTGGTCCTCTTGTTCACCTCCTTCAAAACGCTGAGTTTGATATTAAGAAAGAGGCTGCTTGGGCTATCTCAAATGCTACCTCCGGTGGATCTCATGATCAAATCAAGATCCTGGTAAATCAGGGGTGTATTAAGCCCTTGTGTGATCTTCTCATCTGTCCTGATCCTAGAATTGTGACTGTTTGTCTGGAGGGGCTTGAAAATATCTTGAAGGTGGGAGAAGCTGATAAAAATATGGGTAATACTGGAGATGTGAATCAATATGCCCAAATGATTGAAGATGCGGAGGGGTTGGAGAAAATTGAGAATTTACAGAGTCATGACAACACTGAGATTTATGAAAAAGCAGTGAAAATTCTTGAAACGTATTGGttggaggaagaagatgagacTATGCCTCCAGGGGATACTTCCCAATCAGGATTCAACTTTAGTTCTGAGGTTCCTGCTGTACCTTCTGGTGCTTCCCTTTATTGTATAGACGCAGGAGTCTTGGCTGAACTATCGGTGAAGTCCTCCAGTATGATGGGGCAACAGTCGGGAATCATTTCAAATTCATCATTGTGCATTGGATCCTGCATGGGTACAGCTTTGGTATATAGGAGGTTGCTGCACCGGCTTGAGTTTTTGCAACAGCTGGTTTTACATATGTCATGGGGCAAGGTGGAGTGGCACGGTTTTCTTGCCATTCCAGAACTATATACTGTATTTCTTTACTGCCGAGTCATCATTCCCAGTGATTTGGCTCTTATAAAGTCTGTGGAGTCAAGATTTTTCGTGTCTTATTTTGGTGTTGGTAAATTCCAGTTGTTATTTCGAGAAACGTCGTCGGGTGAGAACAACAAGTGCTGTACTGATTGCAAAACCACTAAAACCCCACTCTGGAGAGGAGGACCAGCTGGGCCCAAGACGCTGTGCAACGCCTGCGGGATACGATACAGGAAGAGAAGGGCTTGTTCAGTGGGATTGAACAAAGCACAAGACAGGAACAGAGAGAGAGGTCAAAGTACAAGTGTTAGTGATAGCGATCTCAACATAACGGGGTTGGATCAAGAGATGAAGATAGGAACTATGTTCTTCTCATTATTGCAAGTACCCAGATGCAGAATACACAGCATAGCCAATTATTACGACGAAACCTTCCACAGTTTGAGTAAGACTTATGGAAACAATTCTAGTGTTAGGCTACTTGGTTCTAGAATTTATGGGCAGCAGGGAGGACACAGTAAGAAGTGGACTCGAAGACCTGTAACTACAAAAACAGAAGGAACAGGAAATAAACTAACCACCCGGAGCACCAAATCAAGAGGTATCAAGCATGAAATTTCAAGTGCAACAATATTGACAAGTGCTGCAGTAAATGTAAACAAAACACAGTTAGTTCAATCGCAGGATCTTCAATATTGTCACATACAACAAGAGATTGCTCAGAATCAAGATTACTGTGACATACAGCAAGAGATTGCTCAGAATCAAGATTACTGTGACATACATAAAGAGATTGCTCAGAATCAAGATTACTGTGACATACAGCAAGAGATTGCTCAGAATAAAGATTTGTCCAGTTTAGTCACTGTCATTGTTTTTGATATTGAGACTACTGGGTTTAGCAGAGTAGATGGACGGATCATTGAGATTGCACTTCGAGATCTTCAAGGTGGTGAGAACAGCACTTTCCAAACTCTTGTAAATCCTCAGCGCAGTGTGCCTAATTCACATATCCATGGCATTACAACACAGATGGTCAATAAACCTGAGGTTCCAAGGATGAAGGACCTGATTCCCATCTTATTGCAGTACGTTCAAAGCCGTCAGAAGCCTGGGGGATATGTATTATGGGTTGGTCATAATGCTCGCAGTTTTGATGTACCCTTCATCATTCATGAATTCAATCGTTGTTCTATAGAGATTCCACGTAATTGGCTGTTTGCGGATACTCTTCCCTTGACACGCGAACTAATGAAATCTGGAGGAACAAATCTTTCTTCAAAGTCCCTTGCAGCACTTAGTGAGCTCTATAAAATTCGAGTGGATGGATCTGCTCATAGGGCCATGGTAGATGTGAATACATTGTCAAGGATACTTCCTAGATTGACCTTTGATCTGAAGTTGACGTTAGCTGGCCTAGTGGAAAAATCATTTACAGTAGCAGATGTGGTCAActctaagaagaagaagaagaattcagGCTAG 3396 0.4243 MSYRPTGNSRTEVRRNRYKVAVDAEEGRRRREDTMVEIRKNRREESLQKKRREGLQAQQMPAAIHSTAVEKKVNFGDLCFYDLVYVLERQTDRNCLDMNFQLEHLPSMVAGVWSDDSNLQLESTTQFRKLLSIERSPPIEEVIQAGVVPRFVEFLMREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSPSDDVREQAVWALGNVAGDSPRCRDLVLGNGALQPLLTQLNEQAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALTHLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCSRLVELLMHPSPSVLIPALRTVGNIVTGDDMQTQVIINHQALPCLLNLLTNNFKKSIKKEACWTISNITAGNKQQIQGVIEANIIGPLVHLLQNAEFDIKKEAAWAISNATSGGSHDQIKILVNQGCIKPLCDLLICPDPRIVTVCLEGLENILKVGEADKNMGNTGDVNQYAQMIEDAEGLEKIENLQSHDNTEIYEKAVKILETYWLEEEDETMPPGDTSQSGFNFSSEVPAVPSGASLYCIDAGVLAELSVKSSSMMGQQSGIISNSSLCIGSCMGTALVYRRLLHRLEFLQQLVLHMSWGKVEWHGFLAIPELYTVFLYCRVIIPSDLALIKSVESRFFVSYFGVGKFQLLFRETSSGENNKCCTDCKTTKTPLWRGGPAGPKTLCNACGIRYRKRRACSVGLNKAQDRNRERGQSTSVSDSDLNITGLDQEMKIGTMFFSLLQVPRCRIHSIANYYDETFHSLSKTYGNNSSVRLLGSRIYGQQGGHSKKWTRRPVTTKTEGTGNKLTTRSTKSRGIKHEISSATILTSAAVNVNKTQLVQSQDLQYCHIQQEIAQNQDYCDIQQEIAQNQDYCDIHKEIAQNQDYCDIQQEIAQNKDLSSLVTVIVFDIETTGFSRVDGRIIEIALRDLQGGENSTFQTLVNPQRSVPNSHIHGITTQMVNKPEVPRMKDLIPILLQYVQSRQKPGGYVLWVGHNARSFDVPFIIHEFNRCSIEIPRNWLFADTLPLTRELMKSGGTNLSSKSLAALSELYKIRVDGSAHRAMVDVNTLSRILPRLTFDLKLTLAGLVEKSFTVADVVNSKKKKKNSG 1131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g3844 1131 ProSiteProfiles GATA-type zinc finger domain profile. 679 715 IPR000679 GO:0006355|GO:0043565
Sto13g3844 1131 SMART GATA_3 679 737 IPR000679 GO:0006355|GO:0043565
Sto13g3844 1131 PANTHER IMPORTIN SUBUNIT ALPHA 99 551 - -
Sto13g3844 1131 PANTHER IMPORTIN SUBUNIT ALPHA 4 74 - -
Sto13g3844 1131 Pfam Importin beta binding domain 14 125 IPR002652 GO:0006606|GO:0061608
Sto13g3844 1131 SMART exoiiiendus 926 1105 IPR013520 -
Sto13g3844 1131 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 678 718 - -
Sto13g3844 1131 SMART arm_5 263 302 IPR000225 GO:0005515
Sto13g3844 1131 SMART arm_5 389 429 IPR000225 GO:0005515
Sto13g3844 1131 SMART arm_5 178 218 IPR000225 GO:0005515
Sto13g3844 1131 SMART arm_5 304 344 IPR000225 GO:0005515
Sto13g3844 1131 SMART arm_5 346 387 IPR000225 GO:0005515
Sto13g3844 1131 SMART arm_5 432 472 IPR000225 GO:0005515
Sto13g3844 1131 SMART arm_5 219 261 IPR000225 GO:0005515
Sto13g3844 1131 SMART arm_5 135 176 IPR000225 GO:0005515
Sto13g3844 1131 CDD DEDDh 928 1096 - -
Sto13g3844 1131 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 273 315 IPR000225 GO:0005515
Sto13g3844 1131 Gene3D - 13 52 IPR036975 GO:0006606
Sto13g3844 1131 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 189 231 IPR000225 GO:0005515
Sto13g3844 1131 CDD ZnF_GATA 685 718 IPR000679 GO:0006355|GO:0043565
Sto13g3844 1131 ProSitePatterns GATA-type zinc finger domain. 685 710 IPR000679 GO:0006355|GO:0043565
Sto13g3844 1131 Pfam Atypical Arm repeat 487 533 IPR032413 -
Sto13g3844 1131 SUPERFAMILY Ribonuclease H-like 924 1102 IPR012337 -
Sto13g3844 1131 Pfam Armadillo/beta-catenin-like repeat 389 428 IPR000225 GO:0005515
Sto13g3844 1131 Pfam Armadillo/beta-catenin-like repeat 136 176 IPR000225 GO:0005515
Sto13g3844 1131 Pfam Armadillo/beta-catenin-like repeat 274 301 IPR000225 GO:0005515
Sto13g3844 1131 Pfam Armadillo/beta-catenin-like repeat 178 217 IPR000225 GO:0005515
Sto13g3844 1131 Pfam Armadillo/beta-catenin-like repeat 433 470 IPR000225 GO:0005515
Sto13g3844 1131 Pfam Armadillo/beta-catenin-like repeat 347 387 IPR000225 GO:0005515
Sto13g3844 1131 Pfam Armadillo/beta-catenin-like repeat 305 343 IPR000225 GO:0005515
Sto13g3844 1131 Pfam Armadillo/beta-catenin-like repeat 220 261 IPR000225 GO:0005515
Sto13g3844 1131 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 146 189 IPR000225 GO:0005515
Sto13g3844 1131 Pfam Exonuclease 928 1094 IPR013520 -
Sto13g3844 1131 PANTHER IMPORTIN ALPHA 99 551 - -
Sto13g3844 1131 PANTHER IMPORTIN ALPHA 4 74 - -
Sto13g3844 1131 ProSiteProfiles IBB domain profile. 1 60 IPR002652 GO:0006606|GO:0061608
Sto13g3844 1131 MobiDBLite consensus disorder prediction 725 744 - -
Sto13g3844 1131 Gene3D - 103 526 IPR011989 -
Sto13g3844 1131 Pfam GATA zinc finger 685 718 IPR000679 GO:0006355|GO:0043565
Sto13g3844 1131 Gene3D - 680 741 IPR013088 GO:0006355|GO:0008270
Sto13g3844 1131 Gene3D - 925 1106 IPR036397 GO:0003676
Sto13g3844 1131 SUPERFAMILY ARM repeat 10 530 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g3844 Sto-Chr13 39812270 39824640 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g3844 676 747 C2C2-Gata Transcription Factor Family AT5G49300 51.282 6.53e-17 77.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Sto13g3844 RNase_T 1.1e-19 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g3844 K15042 - gmx:100789135 963.755
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto13g3844 13 39812270 39824640 Sto13g3844 13 39812270 39824640 ECH