Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g3839 ATGGGAAGGAAGGAGGAGAAGGATCTGGAGCTAGAGAAAGCTCGTTTAGTGAGCTTGGCTCTTGATTTCGGATTCGACTTAGACTCTGCCAAAAAATGTTTGGATCGTCTTGTCGCTCTTTACGgtcATGATGGCCAGGATTTTATCACTGTGGAGTACTGTGGTGATGATTTTCTCGCTGCTTTAGCTGATTCAATGCAAGATACTGAGGAATGGGATGATTTACAGGCAATTGAATCCGAAGCTTGTGGTACATTGACTAACATGTTTGACAAAAATGTTGTTAGATGTAAATTTGATGACAATGGCATTTCAAGAGACTGCATCAATATTATTGAGGATTCACCCGAACCTCAGAAACACCAAAAAGTGGTGGAGTTGTATTCAAGTGATGAGGAGATGGGATTTGGTATATCAGAGGAAAAATATGTGCCTCCAGGTTCCTATTTGAGTGATAACGTATTTGCGGGTCAGCAATCTCCAAAATCAGGGGATTGCAGAAGTAGCATCACTCAGGGctcaatttcttcatcttcCAGCAAAATACAATGCTTGTCAGCATCAAAGGATGAAAAAAGTACTCTCACTTATGAAGAATTACAGGATCTAGATAACATTGAAATGGCAAATGTTGTTATATTTGGTAATGGGACATTTCGACCATTGCAACGTCAAGCTTGTGAAGTAGCACTGGCAAAGCAAGATTGTTTTATTCTTATGCCTACTGGGGGCGGTAAATCTCTTTGCTACCAGCTTCCAGCAATTCTTCAATCAGGTGTTACAATAGTCGTATCGCCGTTACTTTCACTCATTCAGGACCAGATCATCACGCTGAACATCAAGTTTGGAATACCAGCTACATTTTTGAATTCTCAACAAACTACTTCACAAGCAGCAGCTGTCCTCCAAGAGCTAAGAAAAGACAAACCATCATGTAAGCTCTTGTATGTGACACCTGAGAGAATTGCTGGCAATCAATCATTTCTTGAGCTTCTAAAATGCATGCATCGCAAGGGACAACTAGCAAGTTTTATTGTTGATGAGGCTCACTGTGTTAGCCAATGGGGACATGATTTCCGGCCGGATTATCGGGGATTGGGATGCCTCAAGCTAAACTTTCCAGATATACCTGTCATGGCATTGACTGCCACTGCAACCCAGTCTGTTCGCGAGGACATACTAAATGCTCTAAGAATCCCTCATGCAATTGTTCTGGAAAGAAGTTTTGACAGACCAAATTTGAAGTACGAAGTCATTGCTAAGACAAAGGAGCCACTAAAGCAGCTTGGGAAGCTACTAGTGGATCGTTTCAAGAATCAGTGTGGAATTGTTTACTGCCTTTCAAAAAGTGAATGTGTTGAGGTCTCAAAATTTTTGAACGAGAAATGTAAGATTAAGACAGTGTATTACCATGCTGGCTTGGCTGCCCGCCAAAGAGTTGCTGTTCAAAAGAAATGGCATGAGGGTGAGGTCCATATTGTATGCGCAACTATTGCTTTTGGAATGGGGATAGACAAGCCTGATGTTCGTTTTGTCATCCACAATACATTGTCAAAATCAATTGAAAGCTATTATCAAGAATCAGGAAGGGCTGGAAGAGATAATCTACCAGCAGTTTGCTTTGCTCTATACCAGAAGAAGGATTTTAGTAGAGTTGTGTGCATGTTAAGAAATGGCCAAGgatataaaaaagaaagtttTAAGACAGCAATGGCTCAAGCCCAAAAGATGCAACAATATTGTGAACTAAAGgTTGAATGCCGGAGACAAACTTTACTCAAACACTTTGGAGAACATTTTGACAGAAAAGCCTGCAAATATGGATCTAACCCCTGTGATAACTGTTTAAAGACTGCACTATAA 1863 0.4004 MGRKEEKDLELEKARLVSLALDFGFDLDSAKKCLDRLVALYGHDGQDFITVEYCGDDFLAALADSMQDTEEWDDLQAIESEACGTLTNMFDKNVVRCKFDDNGISRDCINIIEDSPEPQKHQKVVELYSSDEEMGFGISEEKYVPPGSYLSDNVFAGQQSPKSGDCRSSITQGSISSSSSKIQCLSASKDEKSTLTYEELQDLDNIEMANVVIFGNGTFRPLQRQACEVALAKQDCFILMPTGGGKSLCYQLPAILQSGVTIVVSPLLSLIQDQIITLNIKFGIPATFLNSQQTTSQAAAVLQELRKDKPSCKLLYVTPERIAGNQSFLELLKCMHRKGQLASFIVDEAHCVSQWGHDFRPDYRGLGCLKLNFPDIPVMALTATATQSVREDILNALRIPHAIVLERSFDRPNLKYEVIAKTKEPLKQLGKLLVDRFKNQCGIVYCLSKSECVEVSKFLNEKCKIKTVYYHAGLAARQRVAVQKKWHEGEVHIVCATIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPAVCFALYQKKDFSRVVCMLRNGQGYKKESFKTAMAQAQKMQQYCELKVECRRQTLLKHFGEHFDRKACKYGSNPCDNCLKTAL 620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g3839 620 TIGRFAM recQ_fam: ATP-dependent DNA helicase, RecQ family 213 618 IPR004589 GO:0004386|GO:0006310
Sto13g3839 620 Pfam DEAD/DEAH box helicase 221 390 IPR011545 GO:0003676|GO:0005524
Sto13g3839 620 Gene3D - 177 410 IPR027417 -
Sto13g3839 620 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 259 555 IPR027417 -
Sto13g3839 620 SMART helicmild6 453 535 IPR001650 -
Sto13g3839 620 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 425 575 IPR001650 -
Sto13g3839 620 Pfam RecQ zinc-binding 547 616 IPR032284 -
Sto13g3839 620 Pfam Helicase conserved C-terminal domain 429 534 IPR001650 -
Sto13g3839 620 CDD DEXHc_RecQ 213 410 - -
Sto13g3839 620 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 342 351 IPR002464 -
Sto13g3839 620 PANTHER BLOOM SYNDROME PROTEIN 29 618 - -
Sto13g3839 620 PANTHER DNA HELICASE RECQ FAMILY MEMBER 29 618 - -
Sto13g3839 620 CDD SF2_C_RecQ 411 544 - -
Sto13g3839 620 SMART ultradead3 215 419 IPR014001 -
Sto13g3839 620 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 227 403 IPR014001 -
Sto13g3839 620 Gene3D - 411 619 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g3839 Sto-Chr13 39767422 39771959 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g3839 286 533 Eukaryotic Initiation Factors Gene Family AT5G11170 25.581 5.49e-10 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g3839 K10899 - qsu:112003918 948.347
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto13g3839 13 39767422 39771959 Sto13g3839 13 39767422 39771959 ECH