Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g3826 ATGGAAAATACTAATAATCCATACTGCAGCAGCTTAAATGCTATTGAATCTTGTTCCGAAGATGTTGGTAGAAGAATTGGagttcttgaaagatacaaagaagaGTTGTCGAAGCCCTTCTACGAAGCCACCTTCTTTCTCACCAACATCCAATCCCAACTCACCAACCTTTGCACCAACCCAACCTTCACTACTTCTTCCGATGATGAGGGAAAGGGGAATAATGAGGAGGCAGAAGCAGTGGAAGGTGATGAATATTGTGGGAGGCGTGGAAGCGATAAAGAGCTAAAAGATATGCTGCTTCGCAAGTACAGTGGGTATATCAGCAGTTTGAGAAAGGAGTtcttaaagaaaaggaaaaagggtAAGCTTCCAAAGGATGCAAGGATGTCACTCCTTCACTGGTGGAACTCCCACTACAGATGGCCTTATCCTACGGAGGATGAAAAATTGAAGCTATCAGAAATGACAGGACTTGATCAAAAACAGATCAATAACTGGTTCATCAATCAGAGGAAACGCCATTGGAAACCGTCTGAAGATATGCGTTTTGCTGTGATGGAGGGTGCAAGTGGTGGTGACATAAGTGGAGGAGCAGGAGCACCTCAACGTCATCATTTTTGA 624 0.4119 MENTNNPYCSSLNAIESCSEDVGRRIGVLERYKEELSKPFYEATFFLTNIQSQLTNLCTNPTFTTSSDDEGKGNNEEAEAVEGDEYCGRRGSDKELKDMLLRKYSGYISSLRKEFLKKRKKGKLPKDARMSLLHWWNSHYRWPYPTEDEKLKLSEMTGLDQKQINNWFINQRKRHWKPSEDMRFAVMEGASGGDISGGAGAPQRHHF 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g3826 207 ProSitePatterns 'Homeobox' domain signature. 153 176 IPR017970 GO:0000981|GO:0006355
Sto13g3826 207 ProSiteProfiles ELK domain profile. 95 115 IPR005539 GO:0003677
Sto13g3826 207 SUPERFAMILY Homeodomain-like 117 187 IPR009057 -
Sto13g3826 207 Pfam ELK domain 95 116 IPR005539 GO:0003677
Sto13g3826 207 SMART KNOX2_2 18 59 IPR005541 GO:0003677|GO:0005634
Sto13g3826 207 MobiDBLite consensus disorder prediction 61 80 - -
Sto13g3826 207 SMART HOX_1 117 182 IPR001356 GO:0003677
Sto13g3826 207 Pfam Homeobox KN domain 135 174 IPR008422 GO:0003677|GO:0006355
Sto13g3826 207 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 27 189 - -
Sto13g3826 207 Pfam KNOX2 domain 28 58 IPR005541 GO:0003677|GO:0005634
Sto13g3826 207 CDD homeodomain 141 179 IPR001356 GO:0003677
Sto13g3826 207 Gene3D - 113 188 - -
Sto13g3826 207 ProSiteProfiles 'Homeobox' domain profile. 115 178 IPR001356 GO:0003677
Sto13g3826 207 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 10 27 189 - -
Sto13g3826 207 SMART ELK_2 95 116 IPR005539 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g3826 Sto-Chr13 39700697 39704008 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g3826 28 190 Homeobox Transcription Factor Family AT1G70510 55.090 8.80e-57 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Sto13g3826 Homeobox_KN 1.1e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g3826 - - nnu:104598781 233.802
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto13g3826 13 39700697 39704008 Sto13g3826 13 39700697 39704008 ECH