LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sto13g3820	atgaaagggaaagggaagaagaagCCAAGAGTTTCAAACACTGAAATCCATCACTCTCAAACCAACAATGCCAATAATGCTCCCAAACACCCTTCGTCTCCCGACTCTGACGCTTTCTACAACAAACTCATCGACTTCTGGGACACCCTTGGCCTCACTCTAATTATTAATGCCCGAGAATCATTGCTGGACCTGTACCTGCTTTACTCGGAGGTGACCACAAGAGGAGGAAATCTTAAGGTGAGCAGAGACAGGAAATGGGATGAAGTTGCCTGTGCCTTAAAATTGGAAGGTAGCAGCAATGGCAAGTTACCTTCTCAACTTGAAAAGTGCTACACTTATCTTCTTTACCCATTCGAGCAACTCTACCACTACAGGGATCCTGCACAGAAAGCTGCGTCTAACAACATCTTAGGTGTGGGTGTGGTCACAGATGTAAGCTCGGGAAAGAAGCGGAAATCCGAGGCCACTTTTTCTGAATTAATTGATAATAAGGATGGTAAAGTGGTGACAAAGATTTGCAAGGAAATGACAGGGGCTGAGCTTACAGAACATCAAGTGTTGCTACTGACACCCACAAAGGCCAAGGAAGCCAAGAAACGCCGAGTTGCTTCACTGAGGAGATACAAAACTGCGTATCAGATTTTCTTGAAGCAGGAATGTGCTCGATTGAAAACTCGTAATGAGGCATTGGTGGGCTCAAATATGCTACACATGGCCATTGATACATGGAAGAAGATGTCTGAGAGTGAGAAACAGCCGTATGTGGAGGAAAGCaagaaggaaaaggaaagaTTGAAGGAAGAGATGAAGAAAACTGAGAAtaggaaggaggaggaggatgttGAGGGTGGTGATACTGATTACCATGTGACTCTGAAACCTGATGCAGACAACTTTCCGGTTGGCATGAGTCAGTGTGATGCATACTGTTCGTTGGATATACCAACTGAAGCATCAAAGTAA	966	0.4182	MKGKGKKKPRVSNTEIHHSQTNNANNAPKHPSSPDSDAFYNKLIDFWDTLGLTLIINARESLLDLYLLYSEVTTRGGNLKVSRDRKWDEVACALKLEGSSNGKLPSQLEKCYTYLLYPFEQLYHYRDPAQKAASNNILGVGVVTDVSSGKKRKSEATFSELIDNKDGKVVTKICKEMTGAELTEHQVLLLTPTKAKEAKKRRVASLRRYKTAYQIFLKQECARLKTRNEALVGSNMLHMAIDTWKKMSESEKQPYVEESKKEKERLKEEMKKTENRKEEEDVEGGDTDYHVTLKPDADNFPVGMSQCDAYCSLDIPTEASK	321

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Sto13g3820	321	MobiDBLite	consensus disorder prediction	248	293	-	-
	Sto13g3820	321	SMART	hmgende2	205	275	IPR009071	-
	Sto13g3820	321	PANTHER	HIGH MOBILITY GROUP B PROTEIN 9	12	298	-	-
	Sto13g3820	321	Gene3D	High mobility group box domain	191	286	IPR036910	-
	Sto13g3820	321	SMART	ARID_2	30	120	-	-
	Sto13g3820	321	SUPERFAMILY	HMG-box	190	271	IPR036910	-
	Sto13g3820	321	PANTHER	HMG (HIGH MOBILITY GROUP) BOX PROTEIN	12	298	-	-
	Sto13g3820	321	SMART	bright_3	34	125	IPR001606	GO:0003677
	Sto13g3820	321	ProSiteProfiles	ARID domain profile.	33	124	IPR001606	GO:0003677
	Sto13g3820	321	Pfam	ARID/BRIGHT DNA binding domain	36	120	IPR001606	GO:0003677
	Sto13g3820	321	SUPERFAMILY	ARID-like	30	127	IPR036431	GO:0003677
	Sto13g3820	321	MobiDBLite	consensus disorder prediction	248	294	-	-
	Sto13g3820	321	ProSiteProfiles	HMG boxes A and B DNA-binding domains profile.	206	274	IPR009071	-
	Sto13g3820	321	Gene3D	-	12	137	IPR036431	GO:0003677
	Sto13g3820	321	Coils	Coil	256	283	-	-
	Sto13g3820	321	MobiDBLite	consensus disorder prediction	1	34	-	-
	Sto13g3820	321	MobiDBLite	consensus disorder prediction	15	32	-	-
	Sto13g3820	321	Pfam	HMG-box domain	207	272	IPR009071	-

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Sto13g3820	63	270	ARID Transcription Factor Family	AT1G55650	27.354	5.94e-13	66.6

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	ARID	Sto13g3820		ARID	5.9e-12	CL0123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sto13g3820	-		-	var:108325455	216.468