Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g3817 ATGGCATCTTTGGAATCAATCGTAGATTCTAGTAGTGTAGATACGCACCAAGAAGGCAATCAGAGAAAGCGCAGGAAAATCGGGGACGATGCCATGAAGGATGAGAATTCGCTCACTCCGATTCCATGGAGATCCGAGACAGAGCAGCGAAACTATTCCTCCAAGCTCGTCGAAGCTCTCCGCCACGTTCTTCGCAGAAGTCCTCCCGCCACCGCCAAGCCCAGCCGCGGACGTGAAGTTCGTGACATCGCCGACAGAGTTCTTGCGGTGACGGCCAAGGGCAGAACTCGGTGGAGTCGGGCGATTCTGGCCGCTCCGTTCAGGCGGAGAAAGTTCCAGAGGCAGCACAAGAAGGTGAAGAAGGCGGCAAACGGATTGAAGAAACCGGAGGTTAGGAGAGAGAGAAGGCAGTTACCGGCTGTGCAGAAGAAAGCGCGCGTTCTCAGCCGGTTAGTTCCCGGTTGCCGGAAGGTCTCGTTTCCGAGTCTTCTGGAAGAAACCACTGATTACATTTCGGCCTTGGAAATGCAAGTGCGAACCATGACAGCACTCACCGAGCTACTCGCCGGCGGCACGCCGGCCGATCGGCTCGGATGGGCCAGACCGTGA 609 0.5649 MASLESIVDSSSVDTHQEGNQRKRRKIGDDAMKDENSLTPIPWRSETEQRNYSSKLVEALRHVLRRSPPATAKPSRGREVRDIADRVLAVTAKGRTRWSRAILAAPFRRRKFQRQHKKVKKAANGLKKPEVRRERRQLPAVQKKARVLSRLVPGCRKVSFPSLLEETTDYISALEMQVRTMTALTELLAGGTPADRLGWARP 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g3817 202 PANTHER TRANSCRIPTION FACTOR BHLH149 13 198 - -
Sto13g3817 202 MobiDBLite consensus disorder prediction 1 15 - -
Sto13g3817 202 MobiDBLite consensus disorder prediction 1 47 - -
Sto13g3817 202 PANTHER TRANSCRIPTION FACTOR IBH1-LIKE 1 13 198 IPR044660 GO:0006355
Sto13g3817 202 MobiDBLite consensus disorder prediction 16 33 - -
Sto13g3817 202 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 125 174 IPR011598 GO:0046983
Sto13g3817 202 CDD bHLH_AtIBH1_like 132 185 IPR044549 GO:0006355
Sto13g3817 202 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 127 190 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g3817 Sto-Chr13 39656435 39657043 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g3817 12 181 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G09250 43.169 4.25e-37 126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g3817 - - aprc:113873135 213.386
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto8g0259 8 1737056 1737661 Sto13g3817 13 39656435 39657043 CCT
Sto13g3817 13 39656435 39657043 Sto8g0259 8 1737056 1737661 ECH
Sto13g3817 13 39656435 39657043 Sto13g3817 13 39656435 39657043 ECH