Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g3815 ATGTCTCTGCGACCTACTTCTCGTACGGAGGCACGCAAGAAGACGTACAAGACGGGAGTAGACGCTGACGAGGCTAGGAGAAGGAGGGAAGACAACCTGGTCGAGATCAGGAAGAACAAGCGTGAGGACAATCTCCtcaagaagagaagagaggggCTTCTTCTTCAGGCTCAGCAATTACTCGATGCTTCCAATAATGCCGCTTCCTTGGAGAACAGATTGGAAGGTATTCCTGCGATGGTACAAGGGATATGGTCTGAGGACCCTGCTACGCAATTGGAAGCAACTACTCAATTCAGAAAGCTGTTATCAATTGAGCGCAGCCCTCCAATTGATGAGGTCATCAGGGCAGGAGTTGTTCCTAGGTTTGTGGAGTTTTTGAAAAGGAATGATGTACCCCAATTGCAGTTTGAAGCTGCATGGGCTTTGACCAATGTTGCATCTGGAACATCTGAACATACAAGAGTGGTCATTGAACATGGTGCTGTTCCTCTGTTTGTACAACTTCTGAGCTCTACTAGTGATGACGTTAGAGAACAGGCAGTATGGGCTTTAGGTAATGTTGCTGGTGATTCTCCGAGCTGTAGGGATCTTGTTGTTAATCACGGTGCACTCATGCCATTATTGTCTCAGTTGAATCAACACTCAAAATTATCTATGCTGAGGAATGCTACATGGACTCTGTCTAACTTCTGTCGTGGAAAGCCTCCTACACCTTTTGAACAGGTAAGGCCTGCCTTGCCTGTCCTTCGGCAGCTCATTTACTTAACTGATGAAGAAGTTTTAACAGATGCATGCTGGGCTCTCTCTTACCTATCAGATGGccctaatgagaaaattcaagCAGTAATTGAAGCTGGAGTCTGCCCACGACTTGTGGAGCTTCTTCTGCATACATCACCTACAGTTCTTGTACCTGCTCTTCGAACTGTGGGAAATATTGTTACTGGTGACGATGCTCAGACTCAGTTTGTAATTGACAATCGAGTGCTCCCCTGCCTTTACCAACTTCTCActcaaaatctcaaaaaaaGCATCAAGAAAGAAGCTTGTTGGACAATTTCAAATATTACAGCTGGGAATAGAGCTCAAATTCAGGCTGTCATTGAGGCCAATATCATTCATCCTCTTGTCCATCTTCTCCAGCATGCTGAGTTTGACATCAAGAAGGAGGCTGCATGGGCCATCTCCAATGCCACTTCTGGAGGTTCTCATGAGCAGATTCAGTTCCTGGTGAGTCAAGGTTGCATTAAGCCACTGTGTGATCTCTTGACCTGTCCAGACCCGAGGATTGTAACAGTATGTCTTGAAGGCCTAGATAACATATTGAAGGTGGGTGAAGCTGACAAGGAAAGGGGACTACATGGAGGAATCAATATTTATGCACAAATGATAGATGAATGTGAAGGATTGGATAAGATTGAAAATTTGCAGACTCATGACAACAATGAGATCTATGAGAAGGCTGTGAAGATTCTAGAGAGATATTGGGCcgaggaagaagaggaaaatCAGAATGTCCAGAATGGTGGAGATGGTAATCAACAAGCTTTTTCTTTTGGGAGTAACCAGCCCAACCTCCCCCAAGGTGGTTTTAAGTTTTGA 1605 0.4305 MSLRPTSRTEARKKTYKTGVDADEARRRREDNLVEIRKNKREDNLLKKRREGLLLQAQQLLDASNNAASLENRLEGIPAMVQGIWSEDPATQLEATTQFRKLLSIERSPPIDEVIRAGVVPRFVEFLKRNDVPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPLFVQLLSSTSDDVREQAVWALGNVAGDSPSCRDLVVNHGALMPLLSQLNQHSKLSMLRNATWTLSNFCRGKPPTPFEQVRPALPVLRQLIYLTDEEVLTDACWALSYLSDGPNEKIQAVIEAGVCPRLVELLLHTSPTVLVPALRTVGNIVTGDDAQTQFVIDNRVLPCLYQLLTQNLKKSIKKEACWTISNITAGNRAQIQAVIEANIIHPLVHLLQHAEFDIKKEAAWAISNATSGGSHEQIQFLVSQGCIKPLCDLLTCPDPRIVTVCLEGLDNILKVGEADKERGLHGGINIYAQMIDECEGLDKIENLQTHDNNEIYEKAVKILERYWAEEEEENQNVQNGGDGNQQAFSFGSNQPNLPQGGFKF 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g3815 534 SUPERFAMILY ARM repeat 13 501 IPR016024 -
Sto13g3815 534 Pfam Atypical Arm repeat 459 507 IPR032413 -
Sto13g3815 534 ProSiteProfiles IBB domain profile. 1 58 IPR002652 GO:0006606|GO:0061608
Sto13g3815 534 Pfam Armadillo/beta-catenin-like repeat 362 400 IPR000225 GO:0005515
Sto13g3815 534 Pfam Armadillo/beta-catenin-like repeat 405 442 IPR000225 GO:0005515
Sto13g3815 534 Pfam Armadillo/beta-catenin-like repeat 151 189 IPR000225 GO:0005515
Sto13g3815 534 Pfam Armadillo/beta-catenin-like repeat 108 148 IPR000225 GO:0005515
Sto13g3815 534 Pfam Armadillo/beta-catenin-like repeat 192 233 IPR000225 GO:0005515
Sto13g3815 534 Pfam Armadillo/beta-catenin-like repeat 246 273 IPR000225 GO:0005515
Sto13g3815 534 Pfam Armadillo/beta-catenin-like repeat 277 315 IPR000225 GO:0005515
Sto13g3815 534 Pfam Armadillo/beta-catenin-like repeat 318 359 IPR000225 GO:0005515
Sto13g3815 534 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 161 203 IPR000225 GO:0005515
Sto13g3815 534 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 118 161 IPR000225 GO:0005515
Sto13g3815 534 Pfam Importin beta binding domain 12 97 IPR002652 GO:0006606|GO:0061608
Sto13g3815 534 MobiDBLite consensus disorder prediction 1 24 - -
Sto13g3815 534 PANTHER IMPORTIN ALPHA 2 523 - -
Sto13g3815 534 PANTHER IMPORTIN SUBUNIT ALPHA 2 523 - -
Sto13g3815 534 MobiDBLite consensus disorder prediction 502 534 - -
Sto13g3815 534 SMART arm_5 150 190 IPR000225 GO:0005515
Sto13g3815 534 SMART arm_5 318 359 IPR000225 GO:0005515
Sto13g3815 534 SMART arm_5 192 233 IPR000225 GO:0005515
Sto13g3815 534 SMART arm_5 235 274 IPR000225 GO:0005515
Sto13g3815 534 SMART arm_5 404 444 IPR000225 GO:0005515
Sto13g3815 534 SMART arm_5 276 316 IPR000225 GO:0005515
Sto13g3815 534 SMART arm_5 107 148 IPR000225 GO:0005515
Sto13g3815 534 SMART arm_5 361 401 IPR000225 GO:0005515
Sto13g3815 534 Gene3D - 10 50 IPR036975 GO:0006606
Sto13g3815 534 PIRSF Importin_alpha 2 534 IPR024931 GO:0005737|GO:0006606|GO:0061608
Sto13g3815 534 Gene3D - 75 498 IPR011989 -
Sto13g3815 534 MobiDBLite consensus disorder prediction 503 534 - -
Sto13g3815 534 MobiDBLite consensus disorder prediction 7 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g3815 Sto-Chr13 39642473 39647888 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g3815 290 466 U-box Gene Family AT5G67340 24.859 5.06e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g3815 K15042 - rcu:8269839 921.383
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto13g3815 13 39642473 39647888 Sto13g3815 13 39642473 39647888 ECH