Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g3788 ATGCCTCTTTATGAGTTATACCGGATGGCTAGGGAAAAGCTTGATTCTAAAGACTTAAACAGCACGCATGCGTCTGATCAATCTTCCGCACCTGAGAATGACTTTTTTGAGTTGGTTTGGGAAAATGGTCAGATTTCAATGCAGGGTCAACCCAGTAGAGCTAAAAAGAGTCCCACCTGCAAGAGTTTGCCATCTCACAGTGCCAGGATTCGAGATAAAGATATGGGTAATGGCACCAATACCAGGGTGGGAAAGTTTGGGGATTTAGACTCGGGATTGAATGAAATTCCAATGTCGGTGCCTTCAGGTGAAGTAGATTTAAGCCCAGATGAAGACATGGTTCCTTGGTTGAATTATTCAATAGACGactatttgcagcatgaatatAATTCTGATCTTTTGCACGAACTATCTAGGGACACCGTAAACCAGATCCCTGCCTCAGAAAACTTTTCTCTAATGGATAAAAGACATAATTGTAATCAGGAACTTAGGGACTGTCATAGAAATCCTGTGCGTGATTTTTCAACTACAGAACAAGGGATAATTTCCAGGGAATTTTCAGTCGGAGAAGTTGAGACCACTAGAACTAAAACTGGCCCCAATGAGCTTTACCCGCCTTCATTGCAACAATGTCAAACATCATTTGCATCTGTTAGATCCAGAGTATCTGTTATCACTGATAATAATACTAGTAATGCCACCCAGCATGTATCTTGTGGGGAAACCACTCAGATTCCTTCTACCTCAAGCGGATTTGCTAACTTAAAGATGCAGAAGCACGATCCAATAACGCCAAGTACTAGTTCCACTTCTACCATAATGAACTTCTCCCACTTTGCAAGACCTGCTGCTATTATGAGAGCCAATCTTCAGAGCATTGGGAAGATGTCTGGTTTATCTTTGGCAAGATCAGAAAGCATAGTAAATAAGAACAAAGATGCTGCTGCAACTAGCAATAATCCTCTTGAATCAACTCTTGTTGGTTCCAGGAGTGAACTTCCAAGGGATACAAATATGCATTGCCAACAGGAGATGGAGTCCTCCAAGGCTGATTTGAAACCAGTGGAGTTGAAATCTCTTGAACAGAACGCCGCTGCTTCAAAACAGTTTGACATTGCCTGCAAAAAGGATGCCTTGAAGGATGATCAAACTTCAAATATAGTTCTTGGCGAAAGTGGCACTAAAGGACATACAGCTGTTGAAAAAGGAATTGAGCAGGTAGTGGCCTCTTCCTCAGTTTGCTCTGGCAATGGTGTAGAGAGAGTTTCAGACAGCTCAAATCAAAATTTGAAGCGAAAAAGTATTGATACTGAGGACTCTGAGTGCCACAGTGAAGATGTAGAGGAAGAATCAGTGGGTGTTAAAAAGGCAGCTCCTGCTCGAGGGAATACAGGTTCCAAGAGAAGTCGTGCAGCTGAAGTGCATAATCTATCTGAAAGGgtGGATAAAGCTTCAATGCTGGATGAGGCGATTGAGTATCTTAAAACACTTCAGCTCCAAGTTCAAATGATGTCAATGGGAGCTGGTTTATATATGCCTCCAATGATGTTACCCCCTGGAATGCAGCACATGCATTCACCAATGTCTCCATTTCTGCCTATGGGAGTTGGCATGCAAATGGGGTTGGGAATGGGATACGGGATGGCTATGCCTGACATGAATGGTGGATCTTCTAGATTTCCAACGATTCAGATGCCCCAAATGCAAGGAACTCACCTATCTGCTCCCCCTATGTCTGGGCCCACTGCTCAACATGGGATGGCAAGATCAAATCCTCAAGTGTTTGGACTTCCTGGCCAGGGACTTCCCGTACCAATGACACGAACACCTATAATTCCTTTGTCAGGAGGGCCCCTTATGAACTCGTCAGCTTTGGGACTAAATGTCCGTGGAACAGCTATACCTGTGGAAAATATGGATTCAGCTTCAGCCTCTGGCTTAAAGGATCCTATGTCAACTGTGAACTCTCAAGTTGTGCAAAGCACTGATGGCTGTAATCCAACAAGTCAGATGTCTACACAGCATCAAGCAACAAATGTTGGATTGAAAGAATCAGCATTGGCGCATAATAGTGGTCACTCCTCCGATGCTGATGATAAAGGAGCACTCAATCCAGGAAAAgaagataattttaaaactaTTTGCTTTGATGTTGTGATTGCTTCCTCTTCCTTTTTTTCCAGTTTAGATGCCAAGGTTTCTCTGACTGGTTCACTTGCAGCTGGGGCTATTTCATCTACTTTTGTCTCTGCATCtgccttttcttctttctcgttATCATCCTCTGCTGCTTGA 2298 0.4238 MPLYELYRMAREKLDSKDLNSTHASDQSSAPENDFFELVWENGQISMQGQPSRAKKSPTCKSLPSHSARIRDKDMGNGTNTRVGKFGDLDSGLNEIPMSVPSGEVDLSPDEDMVPWLNYSIDDYLQHEYNSDLLHELSRDTVNQIPASENFSLMDKRHNCNQELRDCHRNPVRDFSTTEQGIISREFSVGEVETTRTKTGPNELYPPSLQQCQTSFASVRSRVSVITDNNTSNATQHVSCGETTQIPSTSSGFANLKMQKHDPITPSTSSTSTIMNFSHFARPAAIMRANLQSIGKMSGLSLARSESIVNKNKDAAATSNNPLESTLVGSRSELPRDTNMHCQQEMESSKADLKPVELKSLEQNAAASKQFDIACKKDALKDDQTSNIVLGESGTKGHTAVEKGIEQVVASSSVCSGNGVERVSDSSNQNLKRKSIDTEDSECHSEDVEEESVGVKKAAPARGNTGSKRSRAAEVHNLSERVDKASMLDEAIEYLKTLQLQVQMMSMGAGLYMPPMMLPPGMQHMHSPMSPFLPMGVGMQMGLGMGYGMAMPDMNGGSSRFPTIQMPQMQGTHLSAPPMSGPTAQHGMARSNPQVFGLPGQGLPVPMTRTPIIPLSGGPLMNSSALGLNVRGTAIPVENMDSASASGLKDPMSTVNSQVVQSTDGCNPTSQMSTQHQATNVGLKESALAHNSGHSSDADDKGALNPGKEDNFKTICFDVVIASSSFFSSLDAKVSLTGSLAAGAISSTFVSASAFSSFSLSSSAA 765
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g3788 765 PANTHER TRANSCRIPTION FACTOR PIF3 1 481 IPR044273 GO:0003700|GO:0006355
Sto13g3788 765 PANTHER TRANSCRIPTION FACTOR PIF3 482 674 IPR044273 GO:0003700|GO:0006355
Sto13g3788 765 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 479 525 IPR036638 GO:0046983
Sto13g3788 765 PANTHER TRANSCRIPTION FACTOR PIF3 1 481 - -
Sto13g3788 765 PANTHER TRANSCRIPTION FACTOR PIF3 482 674 - -
Sto13g3788 765 MobiDBLite consensus disorder prediction 47 88 - -
Sto13g3788 765 MobiDBLite consensus disorder prediction 417 431 - -
Sto13g3788 765 MobiDBLite consensus disorder prediction 313 334 - -
Sto13g3788 765 MobiDBLite consensus disorder prediction 47 64 - -
Sto13g3788 765 MobiDBLite consensus disorder prediction 417 476 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g3788 Sto-Chr13 39522169 39526858 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g3788 259 570 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G09530 36.578 4.10e-38 147
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g3788 K12126 - gmx:100794974 827.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto13g3788 13 39522169 39526858 Sto13g3788 13 39522169 39526858 ECH