Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g3787 ATGGGAAGGCATTCGTGCTGTTACAAGCAGAAGCTAAGGAAAGGACTGTGGTCACCGGAGGAAGACGAGAAGCTTCTCAACTATATCACCAAGCATGGGCATGGATGTTGGAGCTCTGTCCCCAAACtagcaggtatatatatatatatatatatatcattaattatcTACACTCTACACTCTACACTACTTCATTTAATTCTATATGCCTGCCTCCCAGGTTTGCAGAGATGTGGGAAGAGCTGCAGATTGAGGTGGATCAATTACCTTAGGCCTGATTTGAAGAGAGGAGCATTCTCCCAACACGAAGAGAATTTAATTATTGAGCTCCATTCACTACTTGGCAACAGGTGGTCTCAGATTGCAGCTCAGTTACCAGGCAGAACCGACAATGAGATCAAGAATCTATGGAATTCGTGCCTCAAAAAGAAGCTCAAGCAAAGAGGCATTGACCCAAACACCCACAAACCCCTCTCTCATCCCAACGACATTCACCCTATTTCTGACTCTTCCAAACCACACCAACCATACCCACCTGATTCCCACGACTTGTTTCTGCACCATAAGTCTTATAATTCTGATATGCTGGCTTGCTTCTCCTTCCACCACTTCAACTATCCcaccactactactactactacttcttcttcttctctttgcttcaataataatattcccacttccacttcccCTTCCCCTTCCTCAACCACTATGCTCCATTCTATTCTGCCAACCACCGTCAACCCCACTCTTACTCTCCAATCCAACAATCCTCATCACCCATTACCAAATACCATTCCCCACTTGGTGGACAATCAGGCTTTAGCATGGGAAAATAATAAAGACTTACCAGACGACATCAAATGGTCTGACTATCTTAACACACCCTTCTTTCTCGGAAATCAAATGCTTCAAACCTCTCCATCTATCTACGCTACTGCTACTGAGGTCAAACCAGAAACGGGTTTCTTGGTGGACGACTCCTGCACCACCACCACTAGTTGGCACCATACCCACCCACAACTTTTTCAACCTTCTTCAGATATTTATTCTAAGGACGTCCACAGATTTTCAATGGCTTTTGGACAAACGCTTTAG 1098 0.4089 MGRHSCCYKQKLRKGLWSPEEDEKLLNYITKHGHGCWSSVPKLAGIYIYIYISLIIYTLHSTLLHLILYACLPGLQRCGKSCRLRWINYLRPDLKRGAFSQHEENLIIELHSLLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLKQRGIDPNTHKPLSHPNDIHPISDSSKPHQPYPPDSHDLFLHHKSYNSDMLACFSFHHFNYPTTTTTTTSSSSLCFNNNIPTSTSPSPSSTTMLHSILPTTVNPTLTLQSNNPHHPLPNTIPHLVDNQALAWENNKDLPDDIKWSDYLNTPFFLGNQMLQTSPSIYATATEVKPETGFLVDDSCTTTTSWHHTHPQLFQPSSDIYSKDVHRFSMAFGQTL 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g3787 365 CDD SANT 17 90 IPR001005 -
Sto13g3787 365 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 45 IPR017930 -
Sto13g3787 365 SUPERFAMILY Homeodomain-like 76 151 IPR009057 -
Sto13g3787 365 ProSiteProfiles Myb-like domain profile. 91 141 IPR001005 -
Sto13g3787 365 Gene3D - 97 163 - -
Sto13g3787 365 SMART sant 13 92 IPR001005 -
Sto13g3787 365 SMART sant 95 143 IPR001005 -
Sto13g3787 365 CDD SANT 98 138 IPR001005 -
Sto13g3787 365 Pfam Myb-like DNA-binding domain 14 90 IPR001005 -
Sto13g3787 365 Pfam Myb-like DNA-binding domain 96 140 IPR001005 -
Sto13g3787 365 PANTHER MYB DOMAIN PROTEIN 55 281 358 - -
Sto13g3787 365 PANTHER MYB DOMAIN PROTEIN 55 72 163 - -
Sto13g3787 365 PANTHER MYB DOMAIN PROTEIN 55 1 46 - -
Sto13g3787 365 MobiDBLite consensus disorder prediction 149 179 - -
Sto13g3787 365 Gene3D - 11 96 - -
Sto13g3787 365 SUPERFAMILY Homeodomain-like 7 45 IPR009057 -
Sto13g3787 365 ProSiteProfiles Myb-like domain profile. 9 90 IPR001005 -
Sto13g3787 365 PANTHER HOMEODOMAIN-RELATED 72 163 - -
Sto13g3787 365 PANTHER HOMEODOMAIN-RELATED 281 358 - -
Sto13g3787 365 PANTHER HOMEODOMAIN-RELATED 1 46 - -
Sto13g3787 365 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 91 145 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g3787 Sto-Chr13 39506647 39507819 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g3787 1 365 MYB Transcription Factor Family AT1G09540 45.542 6.92e-99 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Sto13g3787 Myb_DNA-binding 7.8e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g3787 K09422 - gmx:778182 337.035
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto8g0318 8 2030942 2032984 Sto13g3787 13 39506647 39507819 CCT
Sto13g3787 13 39506647 39507819 Sto8g0318 8 2030942 2032984 ECH
Sto8g0318 8 2030942 2032984 Sto13g3787 13 39506647 39507819 ECH
Sto13g3787 13 39506647 39507819 Sto13g3787 13 39506647 39507819 ECH