Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g3782 ATGTCTTCTTCAAAGCCTAGCCAATCGTCCAGCAACTCAGGAAGATCAAGACATAGTGCTAGGATCATTGCTCAGACCACTGTGGATGCAAAACTCCATGCGAATTTCGTTGAGTCTGGTAGTTCCTTTGACTACTCCAGTTCTGTGCGTGCTTCTGCAGGTACAGTTAGTACTGGAGAGCATAAACCAAGGTCCGACAGGGTCACATCAGCTTACCTCCATCATATGCAGAAAAGCAAGCTGATCCAGCCTTTCGGGTGCTTGCTAGCCGTTGATGAAAAAACATGCAAGGTCATTGCCTACAGTGAGAATGCACCTGAAATGCTCACCATGTTTACTCATGCTGTCCCCAGTGTTGGTGATCACCCTGCTCTTGCCATTGGATCTGACATTAGAACTATTTTCACTGCTCCAAGTGCTTCTGCCTTGCAGAAGGCAATAGGATTCGTGGAGGTTTCACTTCTTAACCCCATCCTAGTCCATTGCAAGACTTCTGGGAAGCCCTTTTATGCAATTATACATCGTGTCACTGGTAGTTTGATCATTGACTTTGAGCCAGTCAAGCCTTACGAAGTCCCCATGACTGCAGCAGGTGCTCTTCAATCTTACAAGCTCGCAGGCAAAGCAATTACGCGATTACAATCTTTGCCTAGTGGGAGCATGGAAAGGCTGTGTGACACAATGGTTCAGGAGGTTTTTGAACTCACAGGTTATGACAGGGTGATGGCTTATAAATTTCATGAGGATGATCATGGGGAGGTGATCGCTGAGGTCAAAAAGTCTGGCTTAGAGCCATATCTGGGATTGCACTATCCAGCCACTGATATTCCACAGGCCACACGGTTTTTATTCATGAAGAACAAGGTTCGTATGATAGTTGATTGTCGTGCAAAATACGTGAAAGTTCTTCAAGATGAAAAACTTCCATATGATATAACCTTGTGTGGTTCAACCTTGAGGGCTCCTCATAGTTGCCATGTGCAATATATGGAGAACATGAGTTTAATTGCCTCCCTGGTTATGGCGGTTGTGGTCAATGACAACGATGAAGATGGAGATAGCTCTGATTCTGTTCAGCCTGCACGGAAGAGAAAGAGACTCTGGGGCTTAGTAGTTTGCCACAACTATACCCCTCGGTTCGTTCCTTTTCCTCTTAGGTATGCTTGTGAGTTTCTGACTCAAGTGTTTGCTATCAATGTTAACAAAGAATTAGAGTTGGAATATCAGATGATTGAGAAGAATGTCCTGCGCACCCAGACACTTTTGTGTGATATGCTGATGCGAGATGCACCCCTAGGTATTGTTTCACAGACCCCTAATATAATGGATATTGTGAAATGTGATGGAGCTTGCCTCTTGTACAAAAACAAGGTATGGAGATTAGGAGTAACACCAAGTGAATCCCAGATACGAGAGATAGCTTCGTGGCTGTCGGAGTGCCATAAGGACTCCACTGGTTTGAGTACGGATAGCTTGTCTGACGCAGGGTTCCCAGGGGCTGCTGCTCTAGGTGATGCTGTATGTGGGATGGCGGCCGTGAGAATAGCTTCCAAAGACATGGTTTTCTGGTTTCGGTCACACGCTGCTGCAGAAATACGGTGGGGTGGTGCAAAGCATGAAGCGGATGATGGAAGGAGGATGCATCCGAGATCATCGTTCAAGGCTTTCCTTGAAGTTGTGAAGTCAAGGAGCTTGCCATGGAAAGACTACGAAATGGATTCTATCCATTCATTGCAGCTCATACTGAGAAATGCATTCAGAGAGACAGAGATTATGGATATAAGCACAAATGCAATTAATACAAGACTAAGTGACTTGAAAATTGAAGGAATGCAAGAACTGGAAGCAGTGACAAGTGAGATGGTTCGGTTAATTGAAACAGCAACAGTGCCCATTTTGGCAGTTGATGTTGATGGGCTGGTCAATGGGTGGAACTCAAAAATTGCTGAGTTGACAGGTCTTCCGGTTGATCAAGCTGTTGGAAAGCCTTTACTCACACTTGTTGAAGATTCATCAACTGATAGGGTCAAGAAGATGCTGGGCATGGCACTGCAAGGTGAAGAAGAGCAGAATGTCCAATTTGAGATCAAAACACATGGGTCTAAGATTGACTCTGCTCCTATCAGCTTAGTAGTGAATGCTTGTGCAAGTCGGGATCTTCGAGGTAACGTTGTTGGAGTCTGTTTTGTAGCTCAAGATATAACTGCTCAGAAGACAGTTATGGACAAATTCACCCGAATCGAAGGTGATTACAAGGCAATTGTACAGAACCCAAACCCATTGATTCCCCCAATATTCGGTACAGATGAATTTGGCTGGTGTTGTGAATGGAATCCGGCTATGACAAAATTGACTGGATGGAAGCGAGAGGAAGTGATGGATAAGATGCTTTTAGGGGAAGTTTTTGGGACCCAGATGGCTTGTTGTCGTCTCAAGAATCAAGAAGCTTTTGTTAATTTTGGTATTGTGCTTAACAAAGCCATGACTGGTGTGGAAACGGAGAAAGTTGCTTTTGGTTTCTTTACTCGGAAAAATAGGAAGTACGTAGAATGCCTACTTTCTGTGAGTATGAAATTGGACAGTGAAGGTGCAATTACTGGTGTCTTCTGCTTCTTGCAGCTAGCTAGCCCAGAGCTGCAACAAGCACTACATATTCAGCGCCTTTCAGAAAAAACTGCCTTGAAGAGACTGAAAGCCTTAACTTATATGAAAAGGCAGATCCGGAATCCTTTATGTGGGATTATGTTCTCCCGAAAAATGTTGGATGGTACAGAGTTGGGGGCTGAACAAAAACAGTTTCTGCATACTAGTGCTCAGTGTCAGCTCCAGCTCAGCAAAATTCTTGATGACTCAGACCTTGACGGCGTCATTGATGGCTACTTGGATTTGGATATGGTTGAATTCACTGTGCGTGAGGTATTGGTTGCGTCCCTTAGTCAAGTGATGACAAAGAGCGAGGCAAAGAGTATCCGAATAGTTAATGAAGTTGACGATGGTATCATGGCAGAAATCTTATATGGTGATAGTCTTAGACTCCAGCAGGTCTTAGCGGACTTCTTAATGATTTCCATCAGTTTTACACCATCTGGAGGTCAGGTTGTTGTGGCAGCCTCTTTAACCAAAGATCAGCTAGGGAAATCTGTTCATGTTGCCAATTTGGAGTTCAGCATAACACATGCGGGCAGTGGTGTGACGGAAGCATTGCTGAACCAGATGTTTGGAAGTGATGGACATGAATCAGAGGAAGGTATTAGCCTGCTCATCAGTAGAAAGCTACTAAAGCTAATGAATGGTGATGTACGTTATGTAAGGGAAGAAGCCAAATCGTCTTTCATTTTATCAGTTGAACTCCCCGCAGCCCACAAATTAAGGGCTTAA 3378 0.4432 MSSSKPSQSSSNSGRSRHSARIIAQTTVDAKLHANFVESGSSFDYSSSVRASAGTVSTGEHKPRSDRVTSAYLHHMQKSKLIQPFGCLLAVDEKTCKVIAYSENAPEMLTMFTHAVPSVGDHPALAIGSDIRTIFTAPSASALQKAIGFVEVSLLNPILVHCKTSGKPFYAIIHRVTGSLIIDFEPVKPYEVPMTAAGALQSYKLAGKAITRLQSLPSGSMERLCDTMVQEVFELTGYDRVMAYKFHEDDHGEVIAEVKKSGLEPYLGLHYPATDIPQATRFLFMKNKVRMIVDCRAKYVKVLQDEKLPYDITLCGSTLRAPHSCHVQYMENMSLIASLVMAVVVNDNDEDGDSSDSVQPARKRKRLWGLVVCHNYTPRFVPFPLRYACEFLTQVFAINVNKELELEYQMIEKNVLRTQTLLCDMLMRDAPLGIVSQTPNIMDIVKCDGACLLYKNKVWRLGVTPSESQIREIASWLSECHKDSTGLSTDSLSDAGFPGAAALGDAVCGMAAVRIASKDMVFWFRSHAAAEIRWGGAKHEADDGRRMHPRSSFKAFLEVVKSRSLPWKDYEMDSIHSLQLILRNAFRETEIMDISTNAINTRLSDLKIEGMQELEAVTSEMVRLIETATVPILAVDVDGLVNGWNSKIAELTGLPVDQAVGKPLLTLVEDSSTDRVKKMLGMALQGEEEQNVQFEIKTHGSKIDSAPISLVVNACASRDLRGNVVGVCFVAQDITAQKTVMDKFTRIEGDYKAIVQNPNPLIPPIFGTDEFGWCCEWNPAMTKLTGWKREEVMDKMLLGEVFGTQMACCRLKNQEAFVNFGIVLNKAMTGVETEKVAFGFFTRKNRKYVECLLSVSMKLDSEGAITGVFCFLQLASPELQQALHIQRLSEKTALKRLKALTYMKRQIRNPLCGIMFSRKMLDGTELGAEQKQFLHTSAQCQLQLSKILDDSDLDGVIDGYLDLDMVEFTVREVLVASLSQVMTKSEAKSIRIVNEVDDGIMAEILYGDSLRLQQVLADFLMISISFTPSGGQVVVAASLTKDQLGKSVHVANLEFSITHAGSGVTEALLNQMFGSDGHESEEGISLLISRKLLKLMNGDVRYVREEAKSSFILSVELPAAHKLRA 1125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g3782 1125 PANTHER PHYTOCHROME A 1 1120 - -
Sto13g3782 1125 ProSiteProfiles PAC domain profile. 690 746 IPR000700 -
Sto13g3782 1125 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 220 394 IPR016132 -
Sto13g3782 1125 Gene3D - 958 1122 IPR036890 -
Sto13g3782 1125 PANTHER TWO-COMPONENT HISTIDINE KINASE 1 1120 - -
Sto13g3782 1125 CDD HisKA 900 950 IPR003661 GO:0000155|GO:0007165
Sto13g3782 1125 Pfam PAS fold 71 187 IPR013654 GO:0006355
Sto13g3782 1125 SUPERFAMILY PYP-like sensor domain (PAS domain) 77 188 IPR035965 -
Sto13g3782 1125 Pfam Phytochrome region 417 588 IPR013515 GO:0006355|GO:0009584
Sto13g3782 1125 Pfam PAS fold 750 873 IPR013767 GO:0006355
Sto13g3782 1125 Pfam PAS fold 620 734 IPR013767 GO:0006355
Sto13g3782 1125 Gene3D PAS domain 78 323 - -
Sto13g3782 1125 CDD PAS 761 873 IPR000014 -
Sto13g3782 1125 ProSitePatterns Phytochrome chromophore attachment site signature. 320 329 IPR013516 -
Sto13g3782 1125 SMART HisKA_10 895 960 IPR003661 GO:0000155|GO:0007165
Sto13g3782 1125 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 959 1110 IPR036890 -
Sto13g3782 1125 Coils Coil 401 421 - -
Sto13g3782 1125 PIRSF Phytochrome_conventional 1 1125 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
Sto13g3782 1125 Gene3D PAS domain 611 748 - -
Sto13g3782 1125 Gene3D - 201 562 IPR029016 -
Sto13g3782 1125 CDD PAS 628 734 IPR000014 -
Sto13g3782 1125 SUPERFAMILY PYP-like sensor domain (PAS domain) 764 871 IPR035965 -
Sto13g3782 1125 PRINTS Phytochrome signature 135 157 IPR001294 GO:0006355|GO:0009584
Sto13g3782 1125 PRINTS Phytochrome signature 235 254 IPR001294 GO:0006355|GO:0009584
Sto13g3782 1125 PRINTS Phytochrome signature 320 341 IPR001294 GO:0006355|GO:0009584
Sto13g3782 1125 PRINTS Phytochrome signature 434 454 IPR001294 GO:0006355|GO:0009584
Sto13g3782 1125 PRINTS Phytochrome signature 519 538 IPR001294 GO:0006355|GO:0009584
Sto13g3782 1125 PRINTS Phytochrome signature 620 636 IPR001294 GO:0006355|GO:0009584
Sto13g3782 1125 PRINTS Phytochrome signature 639 654 IPR001294 GO:0006355|GO:0009584
Sto13g3782 1125 PRINTS Phytochrome signature 712 729 IPR001294 GO:0006355|GO:0009584
Sto13g3782 1125 PRINTS Phytochrome signature 732 752 IPR001294 GO:0006355|GO:0009584
Sto13g3782 1125 SMART HKATPase_4 1007 1119 IPR003594 -
Sto13g3782 1125 SUPERFAMILY PYP-like sensor domain (PAS domain) 623 730 IPR035965 -
Sto13g3782 1125 TIGRFAM sensory_box: PAS domain S-box protein 624 740 IPR000014 -
Sto13g3782 1125 Gene3D PAS domain 763 876 - -
Sto13g3782 1125 SUPERFAMILY GAF domain-like 200 401 - -
Sto13g3782 1125 ProSiteProfiles PAS repeat profile. 617 687 IPR000014 -
Sto13g3782 1125 Pfam GAF domain 220 404 IPR003018 GO:0005515
Sto13g3782 1125 Gene3D - 409 579 IPR043150 -
Sto13g3782 1125 SMART pas_2 749 818 IPR000014 -
Sto13g3782 1125 SMART pas_2 619 685 IPR000014 -
Sto13g3782 1125 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1007 1116 IPR003594 -
Sto13g3782 1125 SMART gaf_1 220 414 IPR003018 GO:0005515
Sto13g3782 1125 SUPERFAMILY GAF domain-like 412 587 - -
Sto13g3782 1125 ProSiteProfiles PAS repeat profile. 750 802 IPR000014 -
Sto13g3782 1125 ProSiteProfiles Histidine kinase domain profile. 902 1121 IPR005467 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g3782 Sto-Chr13 39473168 39477888 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g3782 1 1122 Histidine Kinase Gene Family AT1G09570 77.067 0.0 1828
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g3782 K12120 - gmx:100790763 1853.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto8g0327 8 2063999 2068041 Sto13g3782 13 39473168 39477888 CCT
Sto13g3782 13 39473168 39477888 Sto13g3782 13 39473168 39477888 ECH