Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g3777 ATGTCTTCTGTAATAGGTGTTTCGTCTATATACCAGACTCCGTCTCTGGAACTATATAAAAGGGCTACAACCACAACGCCTGCTACTACCTCCATTTCGTTGCAAGTTTCGGACAATAAGTCACACTTTAACAACGTTCTCAGAGCTCACCTCACCAACAATGCAAGTGCAATTGCCACGCCCAATTCTTCTGTTCTAAGTGAAGAAGCATTTAAGGGTATAGGTCGTGGCTTCTCCGATAAAGACCCGTTGGATGACGTTATTCAAGACGAGGACTATGGTGATGACTCTGAAAACGATGCTGATAACGATGACGAGCTCGATGTTACCAAACTGGGCTTGCCTTCACGCCTTGTGGATTCACTCCATAACCGTGGgattactcatcttttccccatccaGagaGCTGTGTTAGTACCTGCACTTGAAGGTCGAGATCTCATTGCTCGGGCAAAGACTGGGACCGGGAAAACATTAGCATTCGGGATTCCAATTATTAAAGGACTCACTGAAGACGAACAAAGAACTTCTCAGAGGCGAACTGGTCGGCTTCCCAAAGTATTGGTTCTTGCACCTACCAGGGAGTTAGCAAAGCAAGTAGAGAAAGAGATAAAAGAATCTGCACCTCATTTGAACACAGTTTGTGTTTATGGGGGTGTTTCTTATGTTACACAGCAAAGTGCACTTTCTCGTGGTGTTGATGTAGTGGTTGGAACACCTGGTAGAATAATAGACCTAATAAATGGGAACAGCCTTAAACTGAATGAAGTTAAGTATTTGGTCCTTGACGAAGCTGATCAGATGCTTGCAGTCGGGTTTGAGGAGGATGTGGAAACAATTTTAGAAAAGTTACCATCTCAAAGGCAGAGCATGCTTTTTTCTGCAACCATGCCAACTTGGGTGAAGAAATTGGCAAGAAAATATTTGGACAATCCATTGACGATTGATTTGGTTGGTGAAGAAGAGGAAAAGCTTGCAGAAGGGATCAAACTTTATGCAATATCAGCCACTTCCACTTCAAAGCGGACAATGCTTTCTGATCTTATAACTGTTTATGCAAAGGGTGGGAAGACTATTGTTTTTACCCAGACAAAAAGAGATGCTGATGAAGTATCATTGGCGTTAACAAATACTATACCATCTGAAGCACTGCATGGCGATATATCTCAGCATCAGAGAGAGAGAACTTTGAATGGTTTTCGGCAAGGGAAATTCACAGTGCTTGTTGCCACTGATGTAGCAGCTCGTGGACTTGATATTCCTAATGTTGATTTGGTTATCCACTATGAGCTTCCAAATGACCCTGAAACATTTGTACATCGATCTGGTCGTACTGGGCGTGCAGGAAAGCTAGGTACTGCCCTTCTGATGTACACCAATAGCCAGAGGAGAACAGTTAGGTCTCTTGAGCGTGATGTTGGGTGTAAATTTGAATTCATTACTCCACCAGCTATAGGAGAGGTTTTGGAGTCATCTGCCCAGCAAGTGGTTGCCACACTTAATAGAGTTCATCCTGAATCCATTGAGTTTTTCACCCCAACTGCTCAAAAACTGTTTGAAGAACTAGGAACAAGTGCCCTGGCAGCTGCACTAGCACATCTAAGTGGATTCTCTCGACCTCCTTCATCCCGGTCTCTTCTCAACCATGAACAGGGATGGGTGACACTTCAACTGACTCGAGATCACGATGATTCTAGAAGATTTTTGTCTGCTAGATCAGTCACTGGGTTTCTTTCTGATGTTTATTCTCCAGCTGCTGATGAAGTtggaaaaatacatataattgcGGATGAGAAGGTTCAAGGAGCCGTTTTTGATGTTCCAGAGGAGATTGCTAAAGAGTTACTGAATAAGGAAATACCACCTGGAAACACTATTTCTAAGATCACCAAGTTGCCTCCTTTGCAAGATGATGGGCCTCCTAGTGATTTCTATGGGAAGTTTTCTGACAGAGATCGAAGTAACCGTAGAGGTGGTTCTAGGGATCGGAGAGGAGGTGGTGGTTTTAGAACCTCACGGGGATGGGACTCAGATGATGAAATTGGGGATTCATTTAAGAGAGGTGGTGGCCGAAGTTTTAGAACTGGCAATAGCTGGTCTCAAAAGGCAAGAAGCAGTGAGGATGATTGGCTAATTGGAGGCAGAAGATCAAGCAGGTCTTCATCATCAGACAGATATCTCGCTGTACATTGCAGAAGCTTTGGAGGTGCTTGTTTTAATTGTGGGCAATCTGGACACCGGGCTTCTGAATGCCCCAGCAAAGGCTTCTAA 2271 0.4315 MSSVIGVSSIYQTPSLELYKRATTTTPATTSISLQVSDNKSHFNNVLRAHLTNNASAIATPNSSVLSEEAFKGIGRGFSDKDPLDDVIQDEDYGDDSENDADNDDELDVTKLGLPSRLVDSLHNRGITHLFPIQRAVLVPALEGRDLIARAKTGTGKTLAFGIPIIKGLTEDEQRTSQRRTGRLPKVLVLAPTRELAKQVEKEIKESAPHLNTVCVYGGVSYVTQQSALSRGVDVVVGTPGRIIDLINGNSLKLNEVKYLVLDEADQMLAVGFEEDVETILEKLPSQRQSMLFSATMPTWVKKLARKYLDNPLTIDLVGEEEEKLAEGIKLYAISATSTSKRTMLSDLITVYAKGGKTIVFTQTKRDADEVSLALTNTIPSEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLVIHYELPNDPETFVHRSGRTGRAGKLGTALLMYTNSQRRTVRSLERDVGCKFEFITPPAIGEVLESSAQQVVATLNRVHPESIEFFTPTAQKLFEELGTSALAAALAHLSGFSRPPSSRSLLNHEQGWVTLQLTRDHDDSRRFLSARSVTGFLSDVYSPAADEVGKIHIIADEKVQGAVFDVPEEIAKELLNKEIPPGNTISKITKLPPLQDDGPPSDFYGKFSDRDRSNRRGGSRDRRGGGGFRTSRGWDSDDEIGDSFKRGGGRSFRTGNSWSQKARSSEDDWLIGGRRSSRSSSSDRYLAVHCRSFGGACFNCGQSGHRASECPSKGF 756
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g3777 756 PANTHER - 26 750 - -
Sto13g3777 756 MobiDBLite consensus disorder prediction 644 687 - -
Sto13g3777 756 CDD SF2_C_DEAD 329 458 - -
Sto13g3777 756 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 138 315 IPR014001 -
Sto13g3777 756 Pfam DEAD/DEAH box helicase 131 304 IPR011545 GO:0003676|GO:0005524
Sto13g3777 756 MobiDBLite consensus disorder prediction 82 107 - -
Sto13g3777 756 SMART helicmild6 369 449 IPR001650 -
Sto13g3777 756 MobiDBLite consensus disorder prediction 622 720 - -
Sto13g3777 756 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 26 750 - -
Sto13g3777 756 SUPERFAMILY Retrovirus zinc finger-like domains 735 754 IPR036875 GO:0003676|GO:0008270
Sto13g3777 756 MobiDBLite consensus disorder prediction 691 705 - -
Sto13g3777 756 Gene3D - 108 319 IPR027417 -
Sto13g3777 756 Gene3D - 732 755 - -
Sto13g3777 756 CDD GUCT_Hera 543 623 - -
Sto13g3777 756 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 344 504 IPR001650 -
Sto13g3777 756 Pfam Zinc knuckle 737 753 IPR001878 GO:0003676|GO:0008270
Sto13g3777 756 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 186 470 IPR027417 -
Sto13g3777 756 MobiDBLite consensus disorder prediction 85 105 - -
Sto13g3777 756 Pfam GUCT (NUC152) domain 536 636 IPR012562 GO:0003723|GO:0004386|GO:0005524
Sto13g3777 756 CDD DEADc 118 316 - -
Sto13g3777 756 Pfam Helicase conserved C-terminal domain 342 449 IPR001650 -
Sto13g3777 756 ProSiteProfiles Zinc finger CCHC-type profile. 738 753 IPR001878 GO:0003676|GO:0008270
Sto13g3777 756 SMART ultradead3 126 332 IPR014001 -
Sto13g3777 756 Gene3D - 330 525 IPR027417 -
Sto13g3777 756 SMART c2hcfinal6 737 753 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g3777 Sto-Chr13 39451354 39456391 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g3777 112 471 Eukaryotic Initiation Factors Gene Family AT1G72730 36.585 8.21e-63 214
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g3777 - - vra:106757668 1100.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto13g3777 13 39451354 39456391 Sto8g0327 8 2063999 2068041 ECH
Sto13g3777 13 39451354 39456391 Sto13g3777 13 39451354 39456391 ECH