Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g3769 ATGGAAGTCGATGTAGCATCTGCAGAATGGCAGCCAGCTCACGCGACTTTCTATGGTGGAAGTGATGCCTCAGGAACGATGGGAGGTGCATGTGGTTACGGGAATCTGTTCAATGATGGTTATGGCATAGAAACAGCAGCCTTGAGTAGTGCTCTATTTAATGAGGGGAAGTCATGTGGTGGGTGCTATCGAATATTTTGTGATGAAAAGCAAGCGCCAGAGTGGTGCATCAAGGATGCCCGCATCACTATTACTGCCACAAACTTCTGTCCACCAAACGACAATCTCCCCAACGATGATGGTGGTTGGTGCAATCCTCCAAGACTTCACTTTGATTTGTCTCAGCCTGCTTTTCAGACAATAGCCAAGTACGAGGCTGGAATTGTACCAATTTTCTACAGAAAAGTTTCGTGCAGAAGAAAGGGAGGGATAGTATTTACAATCAACGGGAGTGATTATTTTCAACTAGTGCTTATAACCAACGTAGGTGGAAGTGGAAAGATTTGGCGTGTTTGGGTGAAGGGGTCGGAAATGGATGAATGGGAAAGCATGTCAAGGAACTGGGGTGCAAACTGGCAGAGCCTAAGCTATCTCAACAATCAGAGCTTGTCTTTCAGAGTCCAACTAGGCAATGCACGTACTCTCACAGCTTATCATGTGGCGCCCTCCAATTGGCAATTTGGTCAGACTTTCACCAGCCATGTTCAGGTTCTTGATTTGTTGAAGCTGTTGAGTAGTAATCTGGAAAGTCTGGGCGAGGATATCATCGGGCACACTTGGTGTAGCCCCAAACAGAGCTGGTTGTACAAACAATGCCCCTGGGTTTTGACTGTTGAAGACCGCGATATGAGAACCAGGCTTATCCCCAATGTTGTTCAAATAGTGAAGCAAATTTTTTGGAAACACAAACATTTCACCCTTTGTTATGATCTTAGAGAAGTGCTTGTTGGAGGTGGTGATGAAGCCCACTTGAAAGACTCCTTCCAAAACAAACACAACCTCAGTGGCTCGCGGATGAGTGTGAGGTGCGGTAAAGCCTCCAGCTCTGTAATCTGCCCTTACCAAAGACAACCCCATTGTGTTAAGCCCTGGAACTTGATCTGCAGAGGCTGCTTGTACCACTGA 1125 0.464 MEVDVASAEWQPAHATFYGGSDASGTMGGACGYGNLFNDGYGIETAALSSALFNEGKSCGGCYRIFCDEKQAPEWCIKDARITITATNFCPPNDNLPNDDGGWCNPPRLHFDLSQPAFQTIAKYEAGIVPIFYRKVSCRRKGGIVFTINGSDYFQLVLITNVGGSGKIWRVWVKGSEMDEWESMSRNWGANWQSLSYLNNQSLSFRVQLGNARTLTAYHVAPSNWQFGQTFTSHVQVLDLLKLLSSNLESLGEDIIGHTWCSPKQSWLYKQCPWVLTVEDRDMRTRLIPNVVQIVKQIFWKHKHFTLCYDLREVLVGGGDEAHLKDSFQNKHNLSGSRMSVRCGKASSSVICPYQRQPHCVKPWNLICRGCLYH 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g3769 374 Gene3D - 143 237 IPR036749 -
Sto13g3769 374 SMART dpbb_1 45 133 IPR007112 -
Sto13g3769 374 Pfam Expansin C-terminal domain 144 222 IPR007117 -
Sto13g3769 374 PANTHER EXPANSIN 2 236 - -
Sto13g3769 374 PRINTS Expansin signature 40 54 IPR002963 GO:0009664
Sto13g3769 374 PRINTS Expansin signature 69 80 IPR002963 GO:0009664
Sto13g3769 374 PRINTS Expansin signature 82 92 IPR002963 GO:0009664
Sto13g3769 374 PRINTS Expansin signature 101 118 IPR002963 GO:0009664
Sto13g3769 374 PRINTS Expansin signature 118 131 IPR002963 GO:0009664
Sto13g3769 374 PRINTS Expansin signature 142 154 IPR002963 GO:0009664
Sto13g3769 374 PRINTS Expansin signature 154 175 IPR002963 GO:0009664
Sto13g3769 374 PRINTS Expansin signature 190 211 IPR002963 GO:0009664
Sto13g3769 374 PRINTS Expansin signature 219 235 IPR002963 GO:0009664
Sto13g3769 374 PANTHER EXPANSIN-A15 2 236 IPR002963 GO:0009664
Sto13g3769 374 PRINTS Expansin/Lol pI family signature 9 24 IPR007118 GO:0005576
Sto13g3769 374 PRINTS Expansin/Lol pI family signature 27 45 IPR007118 GO:0005576
Sto13g3769 374 PRINTS Expansin/Lol pI family signature 49 67 IPR007118 GO:0005576
Sto13g3769 374 PRINTS Expansin/Lol pI family signature 126 142 IPR007118 GO:0005576
Sto13g3769 374 PRINTS Expansin/Lol pI family signature 181 195 IPR007118 GO:0005576
Sto13g3769 374 PRINTS Expansin/Lol pI family signature 219 233 IPR007118 GO:0005576
Sto13g3769 374 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 28 143 IPR007112 -
Sto13g3769 374 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 153 233 IPR007117 -
Sto13g3769 374 SUPERFAMILY Barwin-like endoglucanases 5 161 IPR036908 -
Sto13g3769 374 SUPERFAMILY PHL pollen allergen 140 233 IPR036749 -
Sto13g3769 374 Pfam Lytic transglycolase 45 133 IPR009009 -
Sto13g3769 374 Gene3D - 2 139 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g3769 Sto-Chr13 39406197 39408219 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g3769 1 236 Expansin Gene Family AT4G01630 66.949 3.00e-121 349
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g3769 - - gmx:100787396 387.111