Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g3760 ATGGGGAGGCACTCTTGCTGTTACAAGCAGAAGCTTCGCAAGGGTCTGTGGTCGCCTGAAGAGGATGAAAAACTTCTGAGGCATATCACTAAGTATGGGCATGGCTGTTGGAGCTCCGTTCCTAAGCAAGCAGGTCTGCAGAGGTGTGGTAAGAGCTGTAGGCTTAGGTGGATCAATTACTTGAGGCCTGACTTGAAGAGAGGTACATTctcacaagaagaagaaaatctcATCATTGAACTTCATGCCGTATTGGGGAATAGATGGTCTCAAATAGCCGCACAATTGCCTGGCAGAACTGACAACGAAATCAAGAATCTGTGGAATTCTTGCTTAAAGAAGAAACTGAGGCAGAGAGGGATAGACCCTGTCACCCACAAGCCACTTTCACTCTCTAATGACCTTCTAAACCAAAATGAAGCATCCAATTCAATGAGTCTCAAGTCAGAAAGCCCCAAATCCGATATGGAACCTTCTTCTTCCACCTTCAACTTCAACCACAACAAACACATATTGTTCCCACACACTAGTACCTCTTCAGATTTGAATTTCCCACTTCACATGGcttatgatattcatcagaatCATACCCTCTCAACCTCATCTAACCAACCACTCTTTGATATCAACTCTGAATACATGATGTCTTCTTCTATTCTCCCACCTACCATTGATGTTTCTTCTTTTGCATCCCAATCTCAATTCTGGGAACCCAACATCACACACAATTCTTGGGGATTGCCAGAGTCTGATTGTATTGCCGCCTCTGCGAAAGAGCAAGGCAAGTGGGGTGAGTGTGACTACGTTCAAAATCAAAACCCAATTTTAATGCTTGCTGCCCTACAATACCAAACAGATTCTTCATTAAAGCCTGATGCTTTAGAGCCCATACCCATATTGCCACATAACAAGAAGCACCAAGATGAAGCCTCCCAAAATTCTAGTATGTTTTCCAAGGATATCCAGAAGCTCTCGGAAGCCTTTGGACATATATAG 996 0.4217 MGRHSCCYKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQEEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRGIDPVTHKPLSLSNDLLNQNEASNSMSLKSESPKSDMEPSSSTFNFNHNKHILFPHTSTSSDLNFPLHMAYDIHQNHTLSTSSNQPLFDINSEYMMSSSILPPTIDVSSFASQSQFWEPNITHNSWGLPESDCIAASAKEQGKWGECDYVQNQNPILMLAALQYQTDSSLKPDALEPIPILPHNKKHQDEASQNSSMFSKDIQKLSEAFGHI 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g3760 331 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Sto13g3760 331 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Sto13g3760 331 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Sto13g3760 331 CDD SANT 17 61 IPR001005 -
Sto13g3760 331 PANTHER MYB DOMAIN PROTEIN 55 1 303 - -
Sto13g3760 331 SMART sant 13 63 IPR001005 -
Sto13g3760 331 SMART sant 66 114 IPR001005 -
Sto13g3760 331 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Sto13g3760 331 Gene3D - 11 67 - -
Sto13g3760 331 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Sto13g3760 331 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Sto13g3760 331 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Sto13g3760 331 MobiDBLite consensus disorder prediction 142 161 - -
Sto13g3760 331 Gene3D - 68 146 - -
Sto13g3760 331 PANTHER MYB DOMAIN PROTEIN 55 1 303 - -
Sto13g3760 331 CDD SANT 69 109 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g3760 Sto-Chr13 39370546 39371746 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g3760 1 130 MYB Transcription Factor Family AT4G01680 95.385 6.09e-91 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Sto13g3760 Myb_DNA-binding 1.4e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g3760 K09422 - gmx:100782199 336.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto8g0348 8 2177505 2178823 Sto13g3760 13 39370546 39371746 CCT