Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g3754 ATGTCCGTAGGAGTTATGGCAGATTGTGCAACTAACACAAGATATGGAACCATAAAAGGAGACAGGGCTATTATGCCAAATACGAAAAAGGTAATCTCTAATGGGGAAAATTTCAATGGAGAAAAAAGCAAAGTTGAAGGTGTAACGGCTTCCTTTAATATGAATCAAAATGTAGTACCAGAACAGGTGAAAAGTGCTGAGACTACTAAAACCGTTTACGAAAGAAGACCTACTTCCTCGACCATTGGACTACCCAACCAAACCTCTAATTTACTATTCTCTACGGGAAGGCTAGACAAATCTGATGAAGTATTGTGCGCACCTCAGCTTTTCTCAAATCAGGCATCAAATACTCATTCAAGTAGTTACAACCAGAAGAAGATTCATGCGATCACCAgcaaaaggaagagaaagaaggatGGGATCCCTGAAAGGATAGAAAATGTTACACTGTCCACTGCACAAGAAGTCTTAGAGTCTGATAAACCCAAACAAGAAGACAAAAGAAATACGACGGAAAACAAAACTGAAAATTTGAGGACGAAGCTATGCCAAATATTGGGGACCACGTCTTCCCCTGAGGAAAGATTGCCGCCCGAGCAGCGTTTTGATCAGGAGGACAAATTTAATAAAGCTAAACCGAATTACGATACTATAGAAGCTGATTATAAGAATCCTGATCATAATAACAGGAGGCCAGTAACTCGTTCTTGGAGCCGACAGAGAGCGTCGGTCAAAATGAAGCcatcaaaaagtaaaagtggcTCATCTTCAAGAGACAAAGAGAAGCATCAAGTAAAAAGTATCTTCTCTTTTGAAGAAAGATGGACTGGGGGGCCAAGTACTTTTGTAGATGATGATTCTTTAATGTCATTAAGGAGTAAGAGTCATAGAAAGAACTCTGGAAGTGGTCGACGTAAGATATGCTTCCCCGAAAATGATGCAACAGATAAACTATGTCAAATAACTACCGATACTAATGTAACAACACCGCAAGGTGAGGAAATATTTTCATTTGGGAACAAAAGAGGGTCTCATTTTTGCTTATCCGATCATCAGAAAGAGTCCCCTCAGTCACAGAAAAttatccaagaaaaagaaagtttcCAGTCGCCGACCATAAAGAAGGCAGATCAACACCAAGAACTTGAGAGTTCTGAAAATGGAAACCAACAAAATGATGTAAGTAATCCAGTAGTAGAGGATGTTGCTGGTCCCCAAATAAATTTTCAAAGCCCCACATTTCGACTTAAGACGCTTACTTTAAATTCTACCCGTAGCTCAACGCCAGAAACGGATGTAAAGGCAAGTGATGTTGGCAGTCCAGTATCAACTGAGACTGAAAGAAGATTTATTCTGGGAGCTATTCATAGTTTGAGGACTTCAAAGACTTTGGAGCCAGGCTATAACAAACAAAGGACGCAAAGGCAATCTTCTGATATTGAGGAGCTCATAGATTCTCTTCCCAGAAAAGCTGCATCTTttgtaaaagagaaagaagcgCAGGATGGTCGGTCTGATTCGTCATCTGAAGAGACGGACTTTCAGGGATCTCAAGAAGGTTCAAGAGAAAGAAACATTGCTGAGAAGCAAACTGTTACGCTTAATCCAACAGAAAAGCTGCCAAGGAATGAAAGcattaaatttaacaataaCCATCACGCTTCTCCCTCTTCAAAAGGCAGAACTTCAATTTGGACAGGAGAAAATGATTGGGCCAATGAAGCTTCTGAGCAGAATCAGGAGGATGGATTTGTAAGAGCTATGGAACTCTTTGTCTTGGAATTGGGAAAAGTTAAGAGCAAACTTAAGTCGGTGACAAGTCAGAAATCCTCAGAAATTCTGATATCTGTTGCTGAAGAGATACATCTCCAGCTGCAGAATGTCCATTTTCAGATTCAAACagacatGGGGAAGCTTACGAATCTCAgtaaatcaaagagaaaacggTTAGAAACAAGCTTTGAAGGCCATCAGAAACAGTTGAGGCTGATCCACGAAAAATTCATGGAAAAGATTAATTTGCATCTCAGGGATTGTAGAAGCACTGTTTTAAGTTTCGAGGCAGATCAGATGGAGATCAAGGGAGTTGTCGAAAAGCAAAGAGCATCACATAGAAGACTTCTATCGCAAGTTGAAGAAGCAATGGAAATCCAATTCAATGATGCTCAAAGGAAAATTACAGGCATCCAGGAGGCAATTGGGAAAGGGAAAACTGCTGCAATTGAAGCATGTAATATCTATGTTTTTGAAAGACGGTATGGGAATGATTTTGTTGAGCTGGTATGGAAAAATGGGCAAATCGTGGTGCAAGGAGGCTCGTCATCAACATCAAGTAGAAGAGGGCCCTGCATCACGAAAAGAGCAAGGTTAAACACTGGTTTATACTCCCTTGTGCATCATCAAAATTCCCAACAAACCCATCGCCAACCTTCCTATCTCTTTGATTTCTACGACACCAAAAGCAATACTAAGCTTGAACATGAATTCTCAAATTCAAGAGAAACTAAGACTACTAGTCCATTATGCTCATCTTCCTCACACTCACAGTCACAGAAACACCAAGACTGTGGATGTGATGAAAGAATTAAACCGACAGTGTTTCTGAAATCTGGTTATGGGGGCGTTTCAGCAGCAGATCATTCCCTGGTGATTGATTCTTCATCAGGTGCTAATAAAAGATCACATAGTGTGAATGGAATTGAAGATGTAGAAAAAACTTGTGAGAAAGCAAAGGAAGCAGTAAGAGTAGgtaataatattattgttgCAAAAAGTGATGAGAAAAAAGTGGTCCCTGATCAGCAGTCTGAAGCTATTAAGAGTGAGGCTGAATGTGGTAATCAAACACATAAAAGCAAAGGGAAATTAGCGGCTAATGAAGCCACGTCGCCTTCTTTGTGTTCGCTTGGAGCCTCTAACAACCCTAGTACTAGTAGGAAGCATGTGCATGAGCATGAGGACACCGATGACTCAAACTATATAACTGATAATGAGGAAGAAGATGTTATAACGGAAACTCCTTCGCGGGAGGGTTCCAGAGGCAAGCGAAGCAGAAACGCAGCTACACATAATTTGTCTGAGAGGAAGCGAAGAGATAAGATTAACAAGAAGATGCGCGCTTTAAAAGAGCTTATACCCAATTGCAATAagatggaCAAGGCTTCAATGCTCGATGATGCCATTGATTATCTCAAGACCCTTAAGTTTCAGTTACAGgcaATGTCAATGGGTTGTATGGCTCAAATGATGGTAGGTGGAGGGCATCATTTAATGGGAAGTGGAATGAGCTTGAGGCCTTCAGGCATAGGCATCCCTTACAGCCTGCCTCCTCCCCAGTTCCCTATCCCTAACATGAATCCACACATTTCTCTTCATAATTCCATCActgacaatattaatattaatatgctTGGTTTCCCCAATCATCATCTCCTGCCCATACCATTCTCTATGTCTCCTCCTCTTCCCCCCAATCTCTCTACACTTACACCTCACTCAACCACCACTACTCTCCGTGCTAATAACAACTCTAGTCTAAACGCACAGCTTCTATGTGCCTTCCAAGCTTCCACTCATCAGCTAGCTAGAAGAGAAAAACTAATTCCAGACCCAGAAGGATTAAGTAAGGTCAATGTTCATTACAATATAAGACGGTCATTAGAATTTTCGGAACGAATTGAagatgttgatatatatatatatatacacagtacAGGTTCGGTGTAA 3729 0.3902 MSVGVMADCATNTRYGTIKGDRAIMPNTKKVISNGENFNGEKSKVEGVTASFNMNQNVVPEQVKSAETTKTVYERRPTSSTIGLPNQTSNLLFSTGRLDKSDEVLCAPQLFSNQASNTHSSSYNQKKIHAITSKRKRKKDGIPERIENVTLSTAQEVLESDKPKQEDKRNTTENKTENLRTKLCQILGTTSSPEERLPPEQRFDQEDKFNKAKPNYDTIEADYKNPDHNNRRPVTRSWSRQRASVKMKPSKSKSGSSSRDKEKHQVKSIFSFEERWTGGPSTFVDDDSLMSLRSKSHRKNSGSGRRKICFPENDATDKLCQITTDTNVTTPQGEEIFSFGNKRGSHFCLSDHQKESPQSQKIIQEKESFQSPTIKKADQHQELESSENGNQQNDVSNPVVEDVAGPQINFQSPTFRLKTLTLNSTRSSTPETDVKASDVGSPVSTETERRFILGAIHSLRTSKTLEPGYNKQRTQRQSSDIEELIDSLPRKAASFVKEKEAQDGRSDSSSEETDFQGSQEGSRERNIAEKQTVTLNPTEKLPRNESIKFNNNHHASPSSKGRTSIWTGENDWANEASEQNQEDGFVRAMELFVLELGKVKSKLKSVTSQKSSEILISVAEEIHLQLQNVHFQIQTDMGKLTNLSKSKRKRLETSFEGHQKQLRLIHEKFMEKINLHLRDCRSTVLSFEADQMEIKGVVEKQRASHRRLLSQVEEAMEIQFNDAQRKITGIQEAIGKGKTAAIEACNIYVFERRYGNDFVELVWKNGQIVVQGGSSSTSSRRGPCITKRARLNTGLYSLVHHQNSQQTHRQPSYLFDFYDTKSNTKLEHEFSNSRETKTTSPLCSSSSHSQSQKHQDCGCDERIKPTVFLKSGYGGVSAADHSLVIDSSSGANKRSHSVNGIEDVEKTCEKAKEAVRVGNNIIVAKSDEKKVVPDQQSEAIKSEAECGNQTHKSKGKLAANEATSPSLCSLGASNNPSTSRKHVHEHEDTDDSNYITDNEEEDVITETPSREGSRGKRSRNAATHNLSERKRRDKINKKMRALKELIPNCNKMDKASMLDDAIDYLKTLKFQLQAMSMGCMAQMMVGGGHHLMGSGMSLRPSGIGIPYSLPPPQFPIPNMNPHISLHNSITDNININMLGFPNHHLLPIPFSMSPPLPPNLSTLTPHSTTTTLRANNNSSLNAQLLCAFQASTHQLARREKLIPDPEGLSKVNVHYNIRRSLEFSERIEDVDIYIYIHSTGSV 1242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g3754 1242 SMART finulus 1025 1074 IPR011598 GO:0046983
Sto13g3754 1242 MobiDBLite consensus disorder prediction 421 444 - -
Sto13g3754 1242 MobiDBLite consensus disorder prediction 942 961 - -
Sto13g3754 1242 MobiDBLite consensus disorder prediction 1003 1032 - -
Sto13g3754 1242 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 1019 1068 IPR011598 GO:0046983
Sto13g3754 1242 MobiDBLite consensus disorder prediction 967 1033 - -
Sto13g3754 1242 MobiDBLite consensus disorder prediction 351 370 - -
Sto13g3754 1242 MobiDBLite consensus disorder prediction 495 510 - -
Sto13g3754 1242 MobiDBLite consensus disorder prediction 349 398 - -
Sto13g3754 1242 MobiDBLite consensus disorder prediction 421 445 - -
Sto13g3754 1242 MobiDBLite consensus disorder prediction 528 566 - -
Sto13g3754 1242 PANTHER MEIOSIS-SPECIFIC PROTEIN ASY3 1 733 IPR037731 GO:0051321
Sto13g3754 1242 MobiDBLite consensus disorder prediction 463 483 - -
Sto13g3754 1242 Pfam Meiosis-specific protein ASY3-like 1 733 IPR046845 -
Sto13g3754 1242 MobiDBLite consensus disorder prediction 115 265 - -
Sto13g3754 1242 MobiDBLite consensus disorder prediction 236 252 - -
Sto13g3754 1242 MobiDBLite consensus disorder prediction 384 398 - -
Sto13g3754 1242 MobiDBLite consensus disorder prediction 177 196 - -
Sto13g3754 1242 Gene3D - 1015 1077 IPR036638 GO:0046983
Sto13g3754 1242 MobiDBLite consensus disorder prediction 495 566 - -
Sto13g3754 1242 MobiDBLite consensus disorder prediction 835 853 - -
Sto13g3754 1242 Pfam Helix-loop-helix DNA-binding domain 1022 1068 IPR011598 GO:0046983
Sto13g3754 1242 MobiDBLite consensus disorder prediction 826 856 - -
Sto13g3754 1242 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 1016 1080 IPR036638 GO:0046983
Sto13g3754 1242 MobiDBLite consensus disorder prediction 197 234 - -
Sto13g3754 1242 CDD bHLH_AtPIF_like 1019 1080 - -
Sto13g3754 1242 MobiDBLite consensus disorder prediction 159 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g3754 Sto-Chr13 39333481 39343544 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g3754 756 1104 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G09530 31.387 3.06e-29 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Sto13g3754 HLH 9.3e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g3754 - - gmx:100783804 677.937