Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g3753 ATGGGCAAACCCTCTGCTTCTTCCTCCTCAATCTCATCCTTCAGCTGCACCAACAACTCCACGGCATCCTCATCCCTCAAACACTACTTTTCTACAGATCTTAGTCTTGGACTAAGCATTTCACCCTCTGATGATCAACATCTTCACTCTCCGATttcaagCTTGTTTGTAAAGGTGTACATGGAAGGCATTCCAATTGGCAGAAAACTGGATGTGTTAGCTCATGATGGGTACCGCCACTTAGTGAAGACGCTTGAGCACATGTTTCACACTACCATTCTCTTGGGGACGGAGATAGAAGGAGTGCAAGCAAAGAGAAGCCATGTGCTAACttatgaagatgaagaaggggACTTGATCGTGGTTGGGGATGTTCCTTGGGAGATGTTCATATCCACTGTAAAGAGACTAAGGATCACCAGGGTATAG 429 0.4336 MGKPSASSSSISSFSCTNNSTASSSLKHYFSTDLSLGLSISPSDDQHLHSPISSLFVKVYMEGIPIGRKLDVLAHDGYRHLVKTLEHMFHTTILLGTEIEGVQAKRSHVLTYEDEEGDLIVVGDVPWEMFISTVKRLRITRV 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g3753 142 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 16 - -
Sto13g3753 142 SUPERFAMILY CAD & PB1 domains 53 139 - -
Sto13g3753 142 Pfam AUX/IAA family 51 141 IPR033389 -
Sto13g3753 142 Gene3D - 49 142 - -
Sto13g3753 142 PANTHER AUXIN-INDUCED PROTEIN 50 142 - -
Sto13g3753 142 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 50 142 IPR003311 GO:0005634|GO:0006355
Sto13g3753 142 ProSiteProfiles PB1 domain profile. 54 142 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g3753 Sto-Chr13 39327916 39328780 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g3753 41 139 B3 DNA Binding Superfamily AT4G23980 34.000 2.15e-14 67.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Sto13g3753 AUX_IAA 3.1e-30 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g3753 K14484 - gmx:100784866 162.925
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto8g0351 8 2210938 2211766 Sto13g3753 13 39327916 39328780 CCT