Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g3746 ATGGGTGAGAATCAGGACCTGGATAGCGATGCGAATAAGAAGGATGAGGCAACCGCGTCAGATATTAATCGCGGAGAAAGGGAGAAAAAGGAAGATAAAagcaaacaaaaaggaaaagctGACACAGTTCCGTTTCACAAATTGTTCTCGTTTGCGGACTCCACTGATACCCTGTTGATGATTGTTGGCACCATTGGAGCCGTAGGAAATGGTATCAGTATGCCTCTCATGACATTACTCATGGGCCAAATGATTAATACCTTTGGAAATAACCAGAATAGCAACCAAGTTGTTGATCTAGTTTCCAAGGTCTCTCTGAAATTTGTGTACTTGGCTGTAGGAAGTGCGGCGGCAGCATTTCTTCagGTTGCTAGCTGGATGGTAACAGGGGAGAGACAGGCTGCGAGAATAAGGGGTTTGTATTTGAAAACTATACTAAGACAAGATGTTGCTTTCTTCGATAAGGAAACAAACACCGGAGAGGTGGTTGGGAGAATGTCAGGTGACACTGTTCTCATACAAGACGCCATGGGAGAGAAGGTTGGGAAATTCCTGCAGCTAATATCGACCTTCGTTGGGGGCTTTGTGGTAGCATTTATCAAAGGCTGGCTTCTCTCCCTTGTTATGTTGTCTATTCTTCCACTTCTTGTGGTGGCTGGAGGATCTATGGCCGTCATTATAGGAAGGATGGCATCCCGTGGTCAAACTGCTTATGCACAAGCTGCAAACATAGTGGAACAAACAATTGGCTCCATTAGAACCGTTGTATCATTCACTGGCGAAAAGCAAGCAGTATCTGCTTACAGCAAATTTCTTGTACAAGCATATAAATCAGGAGTGCATGAAGGTGTGGTAGCGGGAATGGGTTTTGGCACTGTTATGTTTGTCTTCTTTTGTGGTTATTCTCTAGCTGTATGGTTTGGCGCAAAGATGATACTAGAAAAAGGATATAACGGGGGTACAGTGATTAATGTGATCATTGCAATATTAACTGCTTCAATGTCTCTTGGGCAGGCAGCCCCTTGCCTGAGTGCTTTTGCTGCTGGTCAAGCAGCAGCTTATAAAATGTTTCAAACTATTGAGAGGAGGCCAGAGATAGATTCTTTTGATCCAAATGGTAAAAAACTGGAGGACATTCAAGGTGAAATTGAGTTAAGGGAAGTTTATTTTAGTTATCCAGCCAGACCTGATGAGCTGATATTCAATGGCTTCTCTCTTCATATACAAAGTGGCACAACTGCAGCTTTAGTTGGACAGAGTGGAAGCGGAAAGTCCACAGTTATCAGTTTGATAGAAAGATTCTACGATCCTCAAGCAGGTGAAGTTCTTATTGATGGCATCAACCTGAAAGAATTTCAGCTTAGATGGATTAGAGGCAAAATCGGCCTCGTCAGCCAGGAGCCTGTGTTGTTTGCATCTAGCATTAAGGATAACATTATCTATGGAAAGGAGGGCGCAACAATTGAAGAGATGAGAGCAGCAGCTGAACTTGCAAATGCCGCGAAGTTCATTGACAAACTACCACAGGGGTATGACACAATGGTCGGGGAGCACGGAACTCAATTATCTGGTGGACAGAAGCAGCGCATTGCCATCGCAAGAGCAATCTTGAAAGATCCAAGAATCCTACTTCTAGATGAAGCTACAAGTGCACTGGATGCAGAGTCTGAAAGGATAGTTCAAGAGGCTCTGGACAGGATCATGGTAAACAGAACTACTGTTATTGTAGCACATCGCTTGAGCACAGTGAGGAATGCAGATATGATTGCCGTCATTCACAGAGGGAAGATGGTTGAAAAAGGAACACACACAGAGCTACTGAAAGATCCCGAGGGAGCTTATTCTCAACTTATACGCTTACaagaagtaaacaaagtgtCAGGAGAAAGTACAGAGAATCAAAGCAAAAGTGATGTTTCCGTAGAATCCTTCAGACAATCGAGTCAAAGGAGATCACTTGGAAGATCCATAAGTCGAGGATCATCTGGGGGGAATAGCAGCCGCCACTCATTTACGGTACCATTTGGTATGCCCGCAGTGGTTAACGTGCCTGAACCTGAACTTGAAAAATCAGAAGCAAGAGAACATTTGCCACCGGTTCCACTTGGCCGCCTTGCTTACCTCAACAAGCCAGAGATTCCAGTGCTTCTACTTGGATGTGTGGTTGCCGTAATAAATGGTACAATActtccaatgtttggtttgttGATTTCCTCTGTTATCAAAACATTCTATGAACCACCTCATGAGATGAGAAAGGATTCCAAGTTTTGGGCACTAATTTTCATGGCCCTTGGTGTCGTATCTCTGTTGGCGCTACCAACTCGAGGATACTTATTTTCTGTGGCTGGCTGCAAGTTAATCCAACGTATCAGATTAATGTGTTTTGAGAAGGTCGTGAGAATGGAGGTTGGTTGGTTTGATGAGCCCGAGCACTCAAGTGGTGTAGTAGGTGCAAGGCTTTCAGCAGACGCTTCAACTGTGCGTGCCCTTGTTGGCGATGCGCTAGGTCTATTGATTCAAAATATAGCATCAGCATTGGCTGGTTTGATTATTGCCTTCATTGCTAGCTGGCAGCTGGCTTTAATTATACTAGTCTTAATCCCCCTGATTGGGGTGAATggatatattcaaataaaattcatgaaggGATTCAGTGCAGATGCTAAGATGATGTACGAGGAAGCTAGCCAAGTAGCTAATGATGCAGTTGGAAGCATACGAACGGTAGCTTCTTTCTGTGCAGAAGATAGGGTAATGGAACTGTACCGGAAAAAATGTGAAGGCCCTATGCAATCTGGGATACGTCAAGGCTTGATCAGTGGGATAGGATTTGGGTGTTCCTTTTTCTTACTCTTCAGTTTCTATGCAACAAGTTTCTACGCAGGAGCTAGACTTGTGGAAGCTGGCAAAACGTCATTCTCGGATGTTTTTCGAGTTTTCTTCGCTTTAACTATGGCAGCAATGGCCGTCTCCCAATCAAGCTCAATGGCTCCAGACTCTAGCAAAGCCAAGTCGGCCACTGCTTCCATATTTGAACTTATTGATAGGAAGTCAATTATAGACTCAAGTGATGAGTCTGGTTCCACATTGGACAACGTAAAGGGAGAAATTGAGCTTCGTCATGTAAGCTTTAAGTATCCATCTAGACCAGATATCCAGATTTTCCGAGACCTCAGCTTGGCTATCCATTCGGGCAAGACGGTGGCTCTCGTGGGTGAAAGTGGAAGTGGGAAATCCACAGTGATTGCATTGTTACAAAGATTTTATGACCCTGACTCAGGTCAAATTACATTAGATGGAATAGAAATTCAGAAGTTACAAATAAAGTGGTTGAGGCAGCAAATGGGGCTTGTGAGCCAAGAGCCAATATTGTTCAATGACACAATCCGTGCCAATATTGCCTATGGAAGGGAAGGCGATGCACCTGAAGCAGATATCATAGCAGCAGCTGAACTAGCCAATGCCCATGGGTTCATTAGTGCCTTACAACAGGGTTATGACACAATTGTTGGAGAGAGAGGAATCCAATTATCTGGTGGGCAGAAGCAAAGGGTTGCCATTGCACGTGCTATTATTAAAAGTCCAAAGATATTGCTGCTAGATGAGGCGACGAGTGCATTAGACGCGGAGTCAGAGAGAGTGGTCCAAGATGCATTAGACAGAGTGATGAAGAATAGAACTACTGTGGTTGTGGCACATCGTTTATCCACAATCAAGAATGCTGATGTCATCGCAGTCGTCAAAAATGGAGTCATAGTAGAAAAAGGAAAGCATGAAACCTTGATTAACATCCAAGCCGGATTTTATGCTTCTTTAGTTCAACTTCATACAAGTGCGTCTACTGTATGA 3852 0.4307 MGENQDLDSDANKKDEATASDINRGEREKKEDKSKQKGKADTVPFHKLFSFADSTDTLLMIVGTIGAVGNGISMPLMTLLMGQMINTFGNNQNSNQVVDLVSKVSLKFVYLAVGSAAAAFLQVASWMVTGERQAARIRGLYLKTILRQDVAFFDKETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLISTFVGGFVVAFIKGWLLSLVMLSILPLLVVAGGSMAVIIGRMASRGQTAYAQAANIVEQTIGSIRTVVSFTGEKQAVSAYSKFLVQAYKSGVHEGVVAGMGFGTVMFVFFCGYSLAVWFGAKMILEKGYNGGTVINVIIAILTASMSLGQAAPCLSAFAAGQAAAYKMFQTIERRPEIDSFDPNGKKLEDIQGEIELREVYFSYPARPDELIFNGFSLHIQSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLRWIRGKIGLVSQEPVLFASSIKDNIIYGKEGATIEEMRAAAELANAAKFIDKLPQGYDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERIVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKMVEKGTHTELLKDPEGAYSQLIRLQEVNKVSGESTENQSKSDVSVESFRQSSQRRSLGRSISRGSSGGNSSRHSFTVPFGMPAVVNVPEPELEKSEAREHLPPVPLGRLAYLNKPEIPVLLLGCVVAVINGTILPMFGLLISSVIKTFYEPPHEMRKDSKFWALIFMALGVVSLLALPTRGYLFSVAGCKLIQRIRLMCFEKVVRMEVGWFDEPEHSSGVVGARLSADASTVRALVGDALGLLIQNIASALAGLIIAFIASWQLALIILVLIPLIGVNGYIQIKFMKGFSADAKMMYEEASQVANDAVGSIRTVASFCAEDRVMELYRKKCEGPMQSGIRQGLISGIGFGCSFFLLFSFYATSFYAGARLVEAGKTSFSDVFRVFFALTMAAMAVSQSSSMAPDSSKAKSATASIFELIDRKSIIDSSDESGSTLDNVKGEIELRHVSFKYPSRPDIQIFRDLSLAIHSGKTVALVGESGSGKSTVIALLQRFYDPDSGQITLDGIEIQKLQIKWLRQQMGLVSQEPILFNDTIRANIAYGREGDAPEADIIAAAELANAHGFISALQQGYDTIVGERGIQLSGGQKQRVAIARAIIKSPKILLLDEATSALDAESERVVQDALDRVMKNRTTVVVAHRLSTIKNADVIAVVKNGVIVEKGKHETLINIQAGFYASLVQLHTSASTV 1283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g3746 1283 Gene3D - 1028 1282 IPR027417 -
Sto13g3746 1283 SUPERFAMILY ABC transporter transmembrane region 47 367 IPR036640 GO:0005524|GO:0016021
Sto13g3746 1283 ProSitePatterns ABC transporters family signature. 522 536 IPR017871 GO:0005524
Sto13g3746 1283 CDD ABC_6TM_Pgp_ABCB1_D2_like 706 1021 - -
Sto13g3746 1283 ProSitePatterns ABC transporters family signature. 1178 1192 IPR017871 GO:0005524
Sto13g3746 1283 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1029 1276 IPR027417 -
Sto13g3746 1283 Pfam ABC transporter 402 550 IPR003439 GO:0005524
Sto13g3746 1283 Pfam ABC transporter 1057 1206 IPR003439 GO:0005524
Sto13g3746 1283 MobiDBLite consensus disorder prediction 1 38 - -
Sto13g3746 1283 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 383 619 IPR003439 GO:0005524
Sto13g3746 1283 SMART AAA_5 410 602 IPR003593 -
Sto13g3746 1283 SMART AAA_5 1065 1238 IPR003593 -
Sto13g3746 1283 Pfam ABC transporter transmembrane region 60 334 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Sto13g3746 1283 Pfam ABC transporter transmembrane region 716 989 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Sto13g3746 1283 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1038 1275 IPR003439 GO:0005524
Sto13g3746 1283 PANTHER - 29 1279 - -
Sto13g3746 1283 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 717 1003 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Sto13g3746 1283 CDD ABC_MTABC3_MDL1_MDL2 1038 1276 - -
Sto13g3746 1283 Gene3D ABC transporter type 1, transmembrane domain 106 1012 IPR036640 GO:0005524|GO:0016021
Sto13g3746 1283 CDD ABC_MTABC3_MDL1_MDL2 383 621 - -
Sto13g3746 1283 PANTHER ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL 29 1279 - -
Sto13g3746 1283 MobiDBLite consensus disorder prediction 625 668 - -
Sto13g3746 1283 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 61 348 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Sto13g3746 1283 CDD ABC_6TM_Pgp_ABCB1_D1_like 60 344 - -
Sto13g3746 1283 Gene3D - 381 638 IPR027417 -
Sto13g3746 1283 SUPERFAMILY ABC transporter transmembrane region 704 1018 IPR036640 GO:0005524|GO:0016021
Sto13g3746 1283 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 372 621 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g3746 Sto-Chr13 39280916 39286735 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g3746 36 1282 Calmodulin-binding Proteins AT2G36910 44.735 0.0 1070
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g3746 K05658 - gmx:100777909 1994.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto8g0359 8 2269791 2274834 Sto13g3746 13 39280916 39286735 CCT