Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g3739 ATGGAAGCTAGATTTGGGTCAGAAGCCTTTCATTATTATGGTATGAGTTCTTCGGATTTGAGGGCCATGGGGAAGAGGTCCTTGGAGTGGGATTTGAATGATTGGAAATGGGATGGTGACCTTTTCATAGCTAGCCCGCTAAATCCAGTGCCAACTGAAAGGATAGGCCAACAATTTTTCCCTCCTCGGTCTGGGATCCCTGCTGTTGGGTCCTCCAACACTTCATCATCCTGCTCCGAAGAAGTAGATCTTGATACTGGCAACGGCAAGAAAGAaggagaaaggaaaaggagggTTATTGTGATGGAGGATGACAGCTTGAATGAGGAAGCAGGTAGCCTTAGCTTAAAGCTTGGTGGACATGGTTCCCCAAATGCTGACAGGGAGATGGGAAGTTGGGAAGGAATGAAAGGAAAGAAAACTAGAGTATCTGGAGGTACTTCAAATCGAGCTGTTTGTCAGGTGGAGGACTGCAGTGCAGATCTGAGCCATGCTAAGGATTATCACCGGCGTCACAAAGTTTGTGAGATGCACTCAAAGGCCAGTAGGGCACTTGTGGGAAATGTAATGCAGCGGTTCTGTCAACAATGTAGTAGGTTTCACATACTTCAAGAGTTTGATGAAGGAAAGAGAAGCTGCCGAAGACGTTTGGCAGGCCATAATAAACGAAGGAGGAAAACCAATAATGATGCTGTTCCTAATGGAAGTTCATTAAATGATGATCAGACTAGTAGTTATCTGTTGATTAGTCTGTTGAAGATACTTTCAAATATGCATTCTAACAGGTCAGATCAAGCCACAGAGCGGGATCTGCTATCTCATCTTCTAAGGAGCCTGGCTAATCAAAATGGTGAGCAAGGGAGCAAGAATTTATCTAACCTTTTGCGGGAACCAGAGAGTTTGTTGAAAGATGGAAGTTTCTCTGGGAAGTCAGAGATGGTTTCTACTTTATTATCAAATGGTTCTCAAGGCTCTCCAGCTCCTATAAGACAATCTATAACTGAAATGCAACATCAAGTGATGCATCCACACAATGCTGGGGCTTCTGAGATGCAAACAATGTCATCTACAAAGCCTAGTATTTCAAACAGTCCTCCGTCTTACTCAGAAGCCAGAGACTGTGCTGCTGGACAGATCAAGATGAATAATTTCGATTTGAATGACATATATATTGATTCAGATGATGGCATGGAAGATATAGAAAGATTGCCTGTGTCTGAAAATCTTGGGATTGGCTCTCTTAATTACCCATGGGCACAACAAGATTCTCATCAGTCAAGTCCACCTCAAACAAGTGGAAACTCAGATTCTGCATCTGCTCAGTCCCCTTCAAGTTCTAGTGGAGAAGCTCAGTGCCGCACAGATCGAATTGTTTTTAAACTCTTTGGTAAAGAACCAAATGATTTTCCTCTTGTACTTAGAGCACAGATTCTTGACTGGCTATCCCATAGTCCTACTGACATTGAGAGCTACATACGGCCTGGTTGTATCATTTTGACCATTTATCTCCGTCAAGATGAGGCTGTGTGGGAGGAACTTTGCTATGATCTGACTTCCAGTTTGAATAGGCTTCTGGATGTCTCAGATGATGCTTTTTGGAGGACAGGATGGGTTCACATTAGGGTGCAGCATCAGATAGCCTTCATTTTTAATGGTCAAGTTGTCATTGATACATCCTTACCTTTTAGAAGTAACAATTATAGTAAGATATTGAGTGTCAGTCCAATTGCTGTACCGGCAGTAGCGAGGGCTCAATTTTCAGTGAAGGGTATTAACCTAATTCGCCCTGCCACTAGGTTATTGTGTGCTCTAGAAGGGAAATATCTGGTCTGTGAAGATGCCAATGAGTCAATGGATCAGTGCTCTAAAGAGCTTGATGAGCTCCAATGTGTCCAGTTTTCATGTTCTGTTCCTGTGATGCATGGGAGAGGATTCATTGAGGTTGAGGACCAGGGTTTGAGCAGCAGCTTTTTTCCTTTCATAGTTGCAGAGGAGGATGTTTGCTCAGAAATCCGTGTGCTTGAGCCTTTACTAGAATCAAGTGTAAATGATTCAGATATTGAAGGAGCTGGAAAATTCAAAGTCAAAAGTGAAGCCATGGATTTCATTCATGAAATGGGTTGGCTTCTCCACAGAAGCCAATTGAAATCAAGGGTGGTTCACATAAACTCTAGTTCTGAGTTTTTTCCATTGAAACGGTTTAAGTGGATCATGGAGTTCTCTATGGACCATGATTGGTGTGCTGTAGTGAAGAAACTATTGAACCTACTACTTGATGGAACTGTGGATACAGGAGATCATCCTTCCCTGTATCTTGCAATTTCAGATATGGGTCTCCTTCATCGAGCTGTAAGGAGAAATAGCAGACAGTTGGTGGAGCTGTTTTTGAGATATGTTCCTGAAAATGCATCTCTTAAGCTAGGACCTGGAGACGAGGCACTGGTTGATGGGGGGAATTCGAGCTTCTTGTTTAGACCTGATGTTGTTGGTCCAGCAGGTTTGACACCACTCCACATAGCGGCTGGGAAAGATGGTTCTGAGGATGTACTAGATGCTTTAACAAATGATCCTTGCATGGTGGGAATTGAAGCATGGAAGAATGCCCGTGACAGCACAGGCTCAACTCCTGAAGATTATGCCCGTCTTCGAGGCCATTATACTTACATTCACCTGGTGCAAAAGAAAATTAACAAGAGacaagcagcagcagcagctcaTGTTGTGGTTGAGATTCCCAGCAATTTGACTGAAAGCAGTACAAACCAGAAGCAAAATGGGTCGTCCAATACCTTTGAGATAGCAAAGGCAGAAGAGAGACGTATCCAAGAGCCCTGCAAACTTTGTGATAATAAATTGTCTTGTAGAGCTGCAGTGGGCAGGTCTTTGGTGTACAAACCTGCAATGCTCTCAATGGTGGCCGTAGCAGCAGTCTGTGTCTGTGTGGCCCTTCTTTTCAAAAGCTCACCTGAAGTTCTCTATGTGTTCCGACCCTTCAGGTGGGAATCGTTGGATTTTGGAACAAGCTAG 3027 0.4288 MEARFGSEAFHYYGMSSSDLRAMGKRSLEWDLNDWKWDGDLFIASPLNPVPTERIGQQFFPPRSGIPAVGSSNTSSSCSEEVDLDTGNGKKEGERKRRVIVMEDDSLNEEAGSLSLKLGGHGSPNADREMGSWEGMKGKKTRVSGGTSNRAVCQVEDCSADLSHAKDYHRRHKVCEMHSKASRALVGNVMQRFCQQCSRFHILQEFDEGKRSCRRRLAGHNKRRRKTNNDAVPNGSSLNDDQTSSYLLISLLKILSNMHSNRSDQATERDLLSHLLRSLANQNGEQGSKNLSNLLREPESLLKDGSFSGKSEMVSTLLSNGSQGSPAPIRQSITEMQHQVMHPHNAGASEMQTMSSTKPSISNSPPSYSEARDCAAGQIKMNNFDLNDIYIDSDDGMEDIERLPVSENLGIGSLNYPWAQQDSHQSSPPQTSGNSDSASAQSPSSSSGEAQCRTDRIVFKLFGKEPNDFPLVLRAQILDWLSHSPTDIESYIRPGCIILTIYLRQDEAVWEELCYDLTSSLNRLLDVSDDAFWRTGWVHIRVQHQIAFIFNGQVVIDTSLPFRSNNYSKILSVSPIAVPAVARAQFSVKGINLIRPATRLLCALEGKYLVCEDANESMDQCSKELDELQCVQFSCSVPVMHGRGFIEVEDQGLSSSFFPFIVAEEDVCSEIRVLEPLLESSVNDSDIEGAGKFKVKSEAMDFIHEMGWLLHRSQLKSRVVHINSSSEFFPLKRFKWIMEFSMDHDWCAVVKKLLNLLLDGTVDTGDHPSLYLAISDMGLLHRAVRRNSRQLVELFLRYVPENASLKLGPGDEALVDGGNSSFLFRPDVVGPAGLTPLHIAAGKDGSEDVLDALTNDPCMVGIEAWKNARDSTGSTPEDYARLRGHYTYIHLVQKKINKRQAAAAAHVVVEIPSNLTESSTNQKQNGSSNTFEIAKAEERRIQEPCKLCDNKLSCRAAVGRSLVYKPAMLSMVAVAAVCVCVALLFKSSPEVLYVFRPFRWESLDFGTS 1008
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g3739 1008 MobiDBLite consensus disorder prediction 68 94 - -
Sto13g3739 1008 MobiDBLite consensus disorder prediction 217 238 - -
Sto13g3739 1008 SUPERFAMILY SBT domain 151 231 IPR036893 GO:0003677|GO:0005634
Sto13g3739 1008 MobiDBLite consensus disorder prediction 349 369 - -
Sto13g3739 1008 MobiDBLite consensus disorder prediction 417 450 - -
Sto13g3739 1008 ProSiteProfiles Zinc finger SBP-type profile. 150 227 IPR004333 GO:0003677
Sto13g3739 1008 Pfam SBP domain 153 226 IPR004333 GO:0003677
Sto13g3739 1008 MobiDBLite consensus disorder prediction 349 371 - -
Sto13g3739 1008 MobiDBLite consensus disorder prediction 68 83 - -
Sto13g3739 1008 Gene3D - 751 911 IPR036770 -
Sto13g3739 1008 MobiDBLite consensus disorder prediction 114 145 - -
Sto13g3739 1008 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 1-RELATED 16 1007 - -
Sto13g3739 1008 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 16 1007 IPR044817 GO:0003677
Sto13g3739 1008 Coils Coil 611 631 - -
Sto13g3739 1008 SUPERFAMILY Ankyrin repeat 774 892 IPR036770 -
Sto13g3739 1008 Gene3D - 143 214 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g3739 Sto-Chr13 39234305 39240575 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g3739 1 1008 SBP-box Gene Family AT3G60030 54.572 0.0 975
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Sto13g3739 SBP 6.6e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g3739 - - gmx:100814273 1630.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto13g3739 13 39234305 39240575 Sto13g3739 13 39234305 39240575 ECH