Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sto13g3739 | ATGGAAGCTAGATTTGGGTCAGAAGCCTTTCATTATTATGGTATGAGTTCTTCGGATTTGAGGGCCATGGGGAAGAGGTCCTTGGAGTGGGATTTGAATGATTGGAAATGGGATGGTGACCTTTTCATAGCTAGCCCGCTAAATCCAGTGCCAACTGAAAGGATAGGCCAACAATTTTTCCCTCCTCGGTCTGGGATCCCTGCTGTTGGGTCCTCCAACACTTCATCATCCTGCTCCGAAGAAGTAGATCTTGATACTGGCAACGGCAAGAAAGAaggagaaaggaaaaggagggTTATTGTGATGGAGGATGACAGCTTGAATGAGGAAGCAGGTAGCCTTAGCTTAAAGCTTGGTGGACATGGTTCCCCAAATGCTGACAGGGAGATGGGAAGTTGGGAAGGAATGAAAGGAAAGAAAACTAGAGTATCTGGAGGTACTTCAAATCGAGCTGTTTGTCAGGTGGAGGACTGCAGTGCAGATCTGAGCCATGCTAAGGATTATCACCGGCGTCACAAAGTTTGTGAGATGCACTCAAAGGCCAGTAGGGCACTTGTGGGAAATGTAATGCAGCGGTTCTGTCAACAATGTAGTAGGTTTCACATACTTCAAGAGTTTGATGAAGGAAAGAGAAGCTGCCGAAGACGTTTGGCAGGCCATAATAAACGAAGGAGGAAAACCAATAATGATGCTGTTCCTAATGGAAGTTCATTAAATGATGATCAGACTAGTAGTTATCTGTTGATTAGTCTGTTGAAGATACTTTCAAATATGCATTCTAACAGGTCAGATCAAGCCACAGAGCGGGATCTGCTATCTCATCTTCTAAGGAGCCTGGCTAATCAAAATGGTGAGCAAGGGAGCAAGAATTTATCTAACCTTTTGCGGGAACCAGAGAGTTTGTTGAAAGATGGAAGTTTCTCTGGGAAGTCAGAGATGGTTTCTACTTTATTATCAAATGGTTCTCAAGGCTCTCCAGCTCCTATAAGACAATCTATAACTGAAATGCAACATCAAGTGATGCATCCACACAATGCTGGGGCTTCTGAGATGCAAACAATGTCATCTACAAAGCCTAGTATTTCAAACAGTCCTCCGTCTTACTCAGAAGCCAGAGACTGTGCTGCTGGACAGATCAAGATGAATAATTTCGATTTGAATGACATATATATTGATTCAGATGATGGCATGGAAGATATAGAAAGATTGCCTGTGTCTGAAAATCTTGGGATTGGCTCTCTTAATTACCCATGGGCACAACAAGATTCTCATCAGTCAAGTCCACCTCAAACAAGTGGAAACTCAGATTCTGCATCTGCTCAGTCCCCTTCAAGTTCTAGTGGAGAAGCTCAGTGCCGCACAGATCGAATTGTTTTTAAACTCTTTGGTAAAGAACCAAATGATTTTCCTCTTGTACTTAGAGCACAGATTCTTGACTGGCTATCCCATAGTCCTACTGACATTGAGAGCTACATACGGCCTGGTTGTATCATTTTGACCATTTATCTCCGTCAAGATGAGGCTGTGTGGGAGGAACTTTGCTATGATCTGACTTCCAGTTTGAATAGGCTTCTGGATGTCTCAGATGATGCTTTTTGGAGGACAGGATGGGTTCACATTAGGGTGCAGCATCAGATAGCCTTCATTTTTAATGGTCAAGTTGTCATTGATACATCCTTACCTTTTAGAAGTAACAATTATAGTAAGATATTGAGTGTCAGTCCAATTGCTGTACCGGCAGTAGCGAGGGCTCAATTTTCAGTGAAGGGTATTAACCTAATTCGCCCTGCCACTAGGTTATTGTGTGCTCTAGAAGGGAAATATCTGGTCTGTGAAGATGCCAATGAGTCAATGGATCAGTGCTCTAAAGAGCTTGATGAGCTCCAATGTGTCCAGTTTTCATGTTCTGTTCCTGTGATGCATGGGAGAGGATTCATTGAGGTTGAGGACCAGGGTTTGAGCAGCAGCTTTTTTCCTTTCATAGTTGCAGAGGAGGATGTTTGCTCAGAAATCCGTGTGCTTGAGCCTTTACTAGAATCAAGTGTAAATGATTCAGATATTGAAGGAGCTGGAAAATTCAAAGTCAAAAGTGAAGCCATGGATTTCATTCATGAAATGGGTTGGCTTCTCCACAGAAGCCAATTGAAATCAAGGGTGGTTCACATAAACTCTAGTTCTGAGTTTTTTCCATTGAAACGGTTTAAGTGGATCATGGAGTTCTCTATGGACCATGATTGGTGTGCTGTAGTGAAGAAACTATTGAACCTACTACTTGATGGAACTGTGGATACAGGAGATCATCCTTCCCTGTATCTTGCAATTTCAGATATGGGTCTCCTTCATCGAGCTGTAAGGAGAAATAGCAGACAGTTGGTGGAGCTGTTTTTGAGATATGTTCCTGAAAATGCATCTCTTAAGCTAGGACCTGGAGACGAGGCACTGGTTGATGGGGGGAATTCGAGCTTCTTGTTTAGACCTGATGTTGTTGGTCCAGCAGGTTTGACACCACTCCACATAGCGGCTGGGAAAGATGGTTCTGAGGATGTACTAGATGCTTTAACAAATGATCCTTGCATGGTGGGAATTGAAGCATGGAAGAATGCCCGTGACAGCACAGGCTCAACTCCTGAAGATTATGCCCGTCTTCGAGGCCATTATACTTACATTCACCTGGTGCAAAAGAAAATTAACAAGAGacaagcagcagcagcagctcaTGTTGTGGTTGAGATTCCCAGCAATTTGACTGAAAGCAGTACAAACCAGAAGCAAAATGGGTCGTCCAATACCTTTGAGATAGCAAAGGCAGAAGAGAGACGTATCCAAGAGCCCTGCAAACTTTGTGATAATAAATTGTCTTGTAGAGCTGCAGTGGGCAGGTCTTTGGTGTACAAACCTGCAATGCTCTCAATGGTGGCCGTAGCAGCAGTCTGTGTCTGTGTGGCCCTTCTTTTCAAAAGCTCACCTGAAGTTCTCTATGTGTTCCGACCCTTCAGGTGGGAATCGTTGGATTTTGGAACAAGCTAG | 3027 | 0.4288 | MEARFGSEAFHYYGMSSSDLRAMGKRSLEWDLNDWKWDGDLFIASPLNPVPTERIGQQFFPPRSGIPAVGSSNTSSSCSEEVDLDTGNGKKEGERKRRVIVMEDDSLNEEAGSLSLKLGGHGSPNADREMGSWEGMKGKKTRVSGGTSNRAVCQVEDCSADLSHAKDYHRRHKVCEMHSKASRALVGNVMQRFCQQCSRFHILQEFDEGKRSCRRRLAGHNKRRRKTNNDAVPNGSSLNDDQTSSYLLISLLKILSNMHSNRSDQATERDLLSHLLRSLANQNGEQGSKNLSNLLREPESLLKDGSFSGKSEMVSTLLSNGSQGSPAPIRQSITEMQHQVMHPHNAGASEMQTMSSTKPSISNSPPSYSEARDCAAGQIKMNNFDLNDIYIDSDDGMEDIERLPVSENLGIGSLNYPWAQQDSHQSSPPQTSGNSDSASAQSPSSSSGEAQCRTDRIVFKLFGKEPNDFPLVLRAQILDWLSHSPTDIESYIRPGCIILTIYLRQDEAVWEELCYDLTSSLNRLLDVSDDAFWRTGWVHIRVQHQIAFIFNGQVVIDTSLPFRSNNYSKILSVSPIAVPAVARAQFSVKGINLIRPATRLLCALEGKYLVCEDANESMDQCSKELDELQCVQFSCSVPVMHGRGFIEVEDQGLSSSFFPFIVAEEDVCSEIRVLEPLLESSVNDSDIEGAGKFKVKSEAMDFIHEMGWLLHRSQLKSRVVHINSSSEFFPLKRFKWIMEFSMDHDWCAVVKKLLNLLLDGTVDTGDHPSLYLAISDMGLLHRAVRRNSRQLVELFLRYVPENASLKLGPGDEALVDGGNSSFLFRPDVVGPAGLTPLHIAAGKDGSEDVLDALTNDPCMVGIEAWKNARDSTGSTPEDYARLRGHYTYIHLVQKKINKRQAAAAAHVVVEIPSNLTESSTNQKQNGSSNTFEIAKAEERRIQEPCKLCDNKLSCRAAVGRSLVYKPAMLSMVAVAAVCVCVALLFKSSPEVLYVFRPFRWESLDFGTS | 1008 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sto13g3739 | 1008 | MobiDBLite | consensus disorder prediction | 68 | 94 | - | - | |
Sto13g3739 | 1008 | MobiDBLite | consensus disorder prediction | 217 | 238 | - | - | |
Sto13g3739 | 1008 | SUPERFAMILY | SBT domain | 151 | 231 | IPR036893 | GO:0003677|GO:0005634 | |
Sto13g3739 | 1008 | MobiDBLite | consensus disorder prediction | 349 | 369 | - | - | |
Sto13g3739 | 1008 | MobiDBLite | consensus disorder prediction | 417 | 450 | - | - | |
Sto13g3739 | 1008 | ProSiteProfiles | Zinc finger SBP-type profile. | 150 | 227 | IPR004333 | GO:0003677 | |
Sto13g3739 | 1008 | Pfam | SBP domain | 153 | 226 | IPR004333 | GO:0003677 | |
Sto13g3739 | 1008 | MobiDBLite | consensus disorder prediction | 349 | 371 | - | - | |
Sto13g3739 | 1008 | MobiDBLite | consensus disorder prediction | 68 | 83 | - | - | |
Sto13g3739 | 1008 | Gene3D | - | 751 | 911 | IPR036770 | - | |
Sto13g3739 | 1008 | MobiDBLite | consensus disorder prediction | 114 | 145 | - | - | |
Sto13g3739 | 1008 | PANTHER | SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 1-RELATED | 16 | 1007 | - | - | |
Sto13g3739 | 1008 | PANTHER | SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 | 16 | 1007 | IPR044817 | GO:0003677 | |
Sto13g3739 | 1008 | Coils | Coil | 611 | 631 | - | - | |
Sto13g3739 | 1008 | SUPERFAMILY | Ankyrin repeat | 774 | 892 | IPR036770 | - | |
Sto13g3739 | 1008 | Gene3D | - | 143 | 214 | IPR036893 | GO:0003677|GO:0005634 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Sto13g3739 | Sto-Chr13 | 39234305 | 39240575 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Sto13g3739 | 1 | 1008 | SBP-box Gene Family | AT3G60030 | 54.572 | 0.0 | 975 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | SBP | Sto13g3739 | SBP | 6.6e-29 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sto13g3739 | - | - | gmx:100814273 | 1630.92 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Sto13g3739 | 13 | 39234305 | 39240575 | Sto13g3739 | 13 | 39234305 | 39240575 | ECH |