Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g3734 ATGGAAACCGTGGGTGTAGCACCTGCTTCTGGGTCAAGAGATGTAAACGCAAATACAGTTGGTGTTGATAGGTTGCCTGCCGAGATGAAGGACATGAAAATTAGGGACGACAAGGAAATGGAAGCAACTGTTGTCGATGGAAATGGTACCGAAGCAGGACATATAATTGTCACTACCATTGGTGGTAAAAATGACCAACCAAAGCAGACAATAAGCTACATGGCTGAACATGTCATTGGGCATGGATCATTTGGAGTAGTTTTCCAGGCAAAATGCTTGGAGACAGGTGAAACTGTGGCTATAAAAAAAGTTCTTCAAGACAAGAGGTACAAGAACCGGGAACTGCAAACCATGCGTCTTCTTGACCACCCTAATGTTGTATCTTTGAAGCATTGTTTCTTTTCAACAACTGAAAAGGAGGAGCTTTACCTAAACTTAGTCTTAGAGTATGTGCCTGAGACCCTCCATCGTGTGATCAGATACTATAATAAAATGAATCAAAGAATGCCGTTGATATATGTCAAACTTTATTTTTACCAGATATGTAGAGCACTTGCTTACATTCACAACAGTATTGGAGTTTGTCACAGGGACATAAAACCTCAAAATTTACTGGTCAACCCTCACACCCATCAGCTGAAGCTATGTGACTTTGGAAGTGCAAAAGTGTTGGTAAAAGGGGAACCAAACATATCATACATCTGTTCTAGGTACTATAGAGCTCCCGAGCTTATCTTTGGTGCGACCGAGTACACAACAGCTATTGACATCTGGTCTGCTGGTTGTGTACTGGGTGAACTACTGCTTGGCCAGGTTTTAGGTACTCCAACCAGGGAAGAAATTAAGTGCATGAATCCTAATTACACAGAGTTTAAATTTCCACAAATCAAAGCTCATCCTTGGCACAAGATCTTTCACAAACGCATGCCATCTGAAGCTGTGGATCTTGTCTCAAGACTGCTGCAATACTCCCCTAATCTTCGAAGCACAGCTCTGGAGGCTTTGGTGCATCCATTCTTTGATGAGCTGCGTGACCCAAATACACGCTTGCCTAATGGGCGTTTCCTTCCTCCACTGTTTAACTTCAAGGCCAATGAGCTTAAGGGAGTGCCTGCCGAGATGCTGGTGAAGCTTATTCCTCCACATGCTCCAGCACCCACACCACCTTCTGATGCTTCTAGCCCTCCTTACAACAATAACTATTATAATGCTTCTGGTTTTTTCGATGTAAGAACATTCGGAGCCGTGGGAGATGGCGCAACAGATGATACAGAGGCATTTAAGATGGCGTGGGACACAGCCTGCCAGAGTGATTCGGCAGTTAATGTCATCCTTGTTCCTAGTGGCTTCTCCTTTGTCATTCAATCTACTATATTCACAGGTCCTTGTCAAGGGCCCATAGTGTTAAAGGTTGACGGCTCTGTTATGCCACCTGATGGACCCGAATCATGGCCGAAGAACAACAGTAGACGACAATGGCTTGTGTTTTACAGAATCGACGGTATGTCACTGGAAGGAGGGGGTTTAATTGATGGCAGAGGACAAAAATGGTGGGACCTTCCTTGTAAGCCTCACAAGGGTCCTCATGGGACAACATTGCCTGGACCTTGTGATAGCCCAATTGCCATAAGATTCTTCATGAGTTCCAATTTAACTGTGCAAGGacttatgatcaagaatagCCCCCAGTTCCATTTCAGATTTGATGGCTGCAAACACGTCCATGTTGAATCTATCTATATAACATCTCCAGCACTTAGTCCCAACACCGATGGAATTCACATAGAGAATACCAACGACGTCAAAATATACAATTCTGTGATTTCTAATGGGGATGACTGTGTGTCCATTGGATCCGGTTGCTATGATGTTGATATAAAAAACATCACTTGTGGACCTGGTCATGGCATTAGCATTGGTAGTCTGGGGAATCACAACTCGCGAGCCTGCGTCTCGAACATAACGGTGAGAGACTCGGTGATAAAAGTGACAGACAATGGGGTAAGAATCAAGACATGGCAAGGTGGATCAGGATCAGTATCAGGAGTGACATTCAGCAATATCCACATGGAGGCAGTGAGGAATCCCATAATAATAGATCAGTTCTACTGCCTCGCTAAGGATTGTAGCAACAAAACCTCTGCAGTGTCTGTATCAAACATAGTTTACTCAAACATAAAGGGAACCTATAATATAAGGAGCCCACCTATGCATTTTGCGTGCAGTGATGCTGTCCCATGTACCAACTTAACTCTATCAGACATTGAGCTTCTTCCTGCTGAGGGAGATATGGTTCATGATCCTTACTGTTGGAATGCCTATGGAGATTTGGAGACACTAACCATTCCACCAGTTTCTTGTCTGCTGGAGGGCACCCCTCAGTCCATGCTAGGCAATGACATAGGTCATTGCTAA 2415 0.4385 METVGVAPASGSRDVNANTVGVDRLPAEMKDMKIRDDKEMEATVVDGNGTEAGHIIVTTIGGKNDQPKQTISYMAEHVIGHGSFGVVFQAKCLETGETVAIKKVLQDKRYKNRELQTMRLLDHPNVVSLKHCFFSTTEKEELYLNLVLEYVPETLHRVIRYYNKMNQRMPLIYVKLYFYQICRALAYIHNSIGVCHRDIKPQNLLVNPHTHQLKLCDFGSAKVLVKGEPNISYICSRYYRAPELIFGATEYTTAIDIWSAGCVLGELLLGQVLGTPTREEIKCMNPNYTEFKFPQIKAHPWHKIFHKRMPSEAVDLVSRLLQYSPNLRSTALEALVHPFFDELRDPNTRLPNGRFLPPLFNFKANELKGVPAEMLVKLIPPHAPAPTPPSDASSPPYNNNYYNASGFFDVRTFGAVGDGATDDTEAFKMAWDTACQSDSAVNVILVPSGFSFVIQSTIFTGPCQGPIVLKVDGSVMPPDGPESWPKNNSRRQWLVFYRIDGMSLEGGGLIDGRGQKWWDLPCKPHKGPHGTTLPGPCDSPIAIRFFMSSNLTVQGLMIKNSPQFHFRFDGCKHVHVESIYITSPALSPNTDGIHIENTNDVKIYNSVISNGDDCVSIGSGCYDVDIKNITCGPGHGISIGSLGNHNSRACVSNITVRDSVIKVTDNGVRIKTWQGGSGSVSGVTFSNIHMEAVRNPIIIDQFYCLAKDCSNKTSAVSVSNIVYSNIKGTYNIRSPPMHFACSDAVPCTNLTLSDIELLPAEGDMVHDPYCWNAYGDLETLTIPPVSCLLEGTPQSMLGNDIGHC 804
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g3734 804 SMART serkin_6 73 340 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sto13g3734 804 ProSitePatterns Polygalacturonase active site. 628 641 IPR000743 GO:0004650|GO:0005975
Sto13g3734 804 Gene3D Transferase(Phosphotransferase) domain 1 153 384 - -
Sto13g3734 804 Gene3D - 394 790 IPR012334 -
Sto13g3734 804 ProSiteProfiles Protein kinase domain profile. 73 340 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sto13g3734 804 SMART pbh1 680 701 IPR006626 -
Sto13g3734 804 SMART pbh1 571 597 IPR006626 -
Sto13g3734 804 SMART pbh1 651 672 IPR006626 -
Sto13g3734 804 SMART pbh1 621 641 IPR006626 -
Sto13g3734 804 SMART pbh1 598 619 IPR006626 -
Sto13g3734 804 Pfam Glycosyl hydrolases family 28 439 757 IPR000743 GO:0004650|GO:0005975
Sto13g3734 804 Gene3D Phosphorylase Kinase; domain 1 57 152 - -
Sto13g3734 804 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 1 383 - -
Sto13g3734 804 PANTHER SHAGGY-RELATED PROTEIN KINASE ALPHA 1 383 - -
Sto13g3734 804 ProSitePatterns Protein kinases ATP-binding region signature. 79 103 IPR017441 GO:0005524
Sto13g3734 804 ProSitePatterns Serine/Threonine protein kinases active-site signature. 194 206 IPR008271 GO:0004672|GO:0006468
Sto13g3734 804 SUPERFAMILY Protein kinase-like (PK-like) 72 365 IPR011009 -
Sto13g3734 804 Pfam Protein kinase domain 74 340 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sto13g3734 804 SUPERFAMILY Pectin lyase-like 404 793 IPR011050 -
Sto13g3734 804 CDD STKc_GSK3 68 343 IPR039192 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g3734 Sto-Chr13 39181056 39188910 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g3734 405 804 Glycoside Hydrolase AT1G02460 72.457 0.0 627
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Sto13g3734 Glyco_hydro_28 1.6e-89 CL0268
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g3734 - - gmx:100778836 768.074
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto13g3734 13 39181056 39188910 Sto13g3734 13 39181056 39188910 ECH
Sto8g0375 8 2392309 2394916 Sto13g3734 13 39181056 39188910 ECH